Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   LG36_RS08335 Genome accession   NZ_CP009472
Coordinates   1747521..1749851 (-) Length   776 a.a.
NCBI ID   WP_038601592.1    Uniprot ID   -
Organism   Lactococcus lactis strain AI06     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1742521..1754851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG36_RS08305 (LG36_1593) - 1743110..1744093 (-) 984 WP_038601585.1 LacI family DNA-binding transcriptional regulator -
  LG36_RS08310 (LG36_1594) purB 1744227..1745522 (-) 1296 WP_038601587.1 adenylosuccinate lyase -
  LG36_RS08315 (LG36_1595) aroD 1745720..1746400 (-) 681 WP_038601588.1 type I 3-dehydroquinate dehydratase -
  LG36_RS08325 (LG36_1596) - 1746663..1746866 (-) 204 WP_038602903.1 DUF2969 family protein -
  LG36_RS08330 (LG36_1597) trxA 1747110..1747424 (-) 315 WP_003129442.1 thioredoxin -
  LG36_RS08335 (LG36_1598) mutS/mutS2 1747521..1749851 (-) 2331 WP_038601592.1 endonuclease MutS2 Machinery gene
  LG36_RS08340 (LG36_1599) - 1749896..1750456 (-) 561 WP_003129445.1 CvpA family protein -
  LG36_RS08345 (LG36_1600) - 1750616..1751581 (-) 966 WP_038601594.1 NAD(P)/FAD-dependent oxidoreductase -
  LG36_RS08350 (LG36_1601) ccpA 1751719..1752717 (-) 999 WP_038601596.1 catabolite control protein A Regulator
  LG36_RS08355 (LG36_1602) - 1752932..1754020 (+) 1089 WP_038601599.1 Xaa-Pro peptidase family protein -

Sequence

Protein


Download         Length: 776 a.a.        Molecular weight: 87235.09 Da        Isoelectric Point: 6.8742

>NTDB_id=112738 LG36_RS08335 WP_038601592.1 1747521..1749851(-) (mutS/mutS2) [Lactococcus lactis strain AI06]
MNKKILQILEYDKVKEQFMNALTTAQGQQELKDLKPLTDKEKIQLLFDEVADFRLLTQENGLLNLGKTNDLTEILRRLEL
EASLSGKEFVEIKKVIQLGINIQRFFDEAENVETPSLAITLEKLVDLSALVKKLEIFDNAGSLYDNASLELMHIRASIKS
HQSEIRKIMQEMLTKNLSSLSENVITIRNDRQVLPVKAENKNKIAGVVHDMSASGQTLYIEPNAVVSLNNKLNQKRIEER
QEITRIYRELASQLKPYSFDIRQNAWLIGHIDFVRAKYLYLAANKATLPELTTDKDITLFAARHPLIEAKTVVANDIKFD
AGLNTIVITGPNTGGKTITLKTVGLLTILAQSGLPILAADGSRIHLFDDIFADIGDEQSIEQSLSTFSSHMTNIVHILAQ
ADENSLVLFDELGAGTDPKEGAALAIAILENLRERNVKTMASTHYPELKAYGVETQQVINASMEFNIDKMQPTYHLQLGV
PGRSNALEISRRLGLPETIISVASQQISDSEHDVNQMIEKLEEKTREVIESSRNIKKIERENQSLHKDLTKVYHQINRER
EFELEKAQKEAQEVVKKASLEAQEILKNLNDKAALKPHEIIAARKELEGLAPTIDFSKNKVLKKAKAQRGLKQGAEVNVT
SYGQRGKLIRLEKDGRWTVQMGSITTRLNEDEFDVIESPEQIQAKTKNVSKKVTSKVKAQLDLRGMRYEEAELELDNYID
QALLANLIQITIVHGIGTGVIREMVQKKLQKHRHIKSYEYAPINAGGSGATIAILK

Nucleotide


Download         Length: 2331 bp        

>NTDB_id=112738 LG36_RS08335 WP_038601592.1 1747521..1749851(-) (mutS/mutS2) [Lactococcus lactis strain AI06]
ATGAATAAAAAAATTCTCCAAATATTGGAATATGATAAAGTCAAAGAACAGTTCATGAATGCTTTGACGACAGCGCAGGG
TCAACAAGAATTAAAAGATTTAAAACCTTTGACAGATAAGGAAAAAATTCAGCTCCTTTTTGATGAAGTTGCTGATTTTC
GCTTATTGACCCAAGAAAATGGCCTATTAAATTTAGGAAAAACAAATGATTTAACAGAAATACTCAGACGTCTAGAGCTT
GAAGCCAGTCTTTCAGGCAAGGAATTCGTTGAAATAAAAAAAGTGATTCAATTAGGGATTAATATTCAACGCTTTTTTGA
TGAAGCTGAAAATGTTGAAACACCTTCACTAGCTATTACTTTGGAAAAATTGGTTGATTTATCAGCATTAGTCAAAAAAT
TAGAAATTTTTGATAATGCGGGAAGTCTTTATGATAATGCCAGTCTCGAATTGATGCATATCCGTGCTTCTATCAAGAGT
CATCAATCAGAAATTCGGAAAATCATGCAGGAAATGTTGACCAAAAATCTCTCATCTTTGAGTGAAAATGTCATCACTAT
CCGAAATGACCGACAAGTGCTTCCTGTAAAAGCAGAAAACAAAAATAAAATTGCAGGTGTAGTTCATGATATGTCTGCTT
CAGGTCAAACGCTTTATATTGAGCCAAATGCGGTTGTTTCATTAAATAATAAACTTAATCAAAAGAGAATTGAAGAACGT
CAAGAAATCACAAGAATTTATCGTGAGCTTGCTAGTCAATTAAAACCTTATAGCTTTGATATAAGACAAAATGCTTGGCT
GATTGGTCATATTGATTTTGTTCGTGCCAAGTATCTTTATTTAGCAGCGAATAAAGCGACACTTCCAGAATTAACAACCG
ATAAAGATATTACCCTTTTTGCAGCTCGCCATCCTTTGATTGAGGCAAAAACTGTTGTGGCAAATGATATTAAATTTGAT
GCAGGGCTCAATACGATTGTTATTACCGGTCCTAATACGGGTGGGAAGACCATTACTTTGAAAACAGTTGGTTTGTTGAC
AATATTGGCTCAATCAGGTCTGCCAATTTTAGCAGCTGATGGCAGTCGAATTCATCTTTTTGATGATATTTTTGCCGATA
TCGGTGATGAGCAATCCATTGAGCAAAGTTTATCAACTTTCTCAAGTCATATGACTAATATTGTTCATATTTTAGCTCAA
GCAGATGAAAATAGTTTGGTCTTATTTGATGAACTTGGGGCAGGAACTGATCCGAAAGAAGGAGCGGCTCTTGCTATTGC
CATACTGGAAAATTTACGTGAACGAAATGTGAAAACCATGGCAAGTACTCATTATCCTGAGTTAAAAGCTTATGGGGTCG
AAACGCAACAAGTAATCAATGCAAGTATGGAATTTAACATTGATAAGATGCAACCCACTTATCATTTGCAACTGGGAGTA
CCTGGACGTTCAAATGCCTTGGAGATTTCTAGAAGATTAGGTTTGCCAGAAACCATTATTTCAGTAGCCAGTCAACAAAT
TTCTGACAGTGAGCATGATGTCAATCAGATGATTGAAAAGTTGGAAGAAAAAACGCGTGAAGTGATTGAAAGTTCAAGAA
ATATTAAAAAAATTGAACGAGAAAATCAAAGTTTACATAAAGATTTGACGAAAGTCTATCATCAAATTAATCGTGAGCGC
GAGTTTGAATTAGAAAAAGCACAAAAAGAAGCTCAAGAAGTAGTTAAAAAAGCAAGTCTTGAAGCGCAAGAAATTTTGAA
GAATCTCAATGATAAAGCAGCATTGAAACCACATGAAATTATTGCTGCTAGAAAAGAACTTGAAGGTTTGGCTCCAACCA
TTGATTTTTCTAAAAATAAGGTTTTGAAAAAAGCAAAAGCACAAAGAGGACTTAAGCAAGGAGCTGAAGTTAATGTCACT
TCTTATGGTCAGCGTGGCAAATTGATTCGTTTAGAAAAAGATGGACGTTGGACGGTTCAAATGGGTTCAATCACGACTCG
TTTAAATGAAGATGAATTTGATGTGATTGAAAGTCCAGAACAAATTCAAGCCAAAACTAAAAATGTCAGTAAAAAGGTGA
CTTCTAAAGTCAAAGCTCAACTTGATTTACGCGGGATGCGTTATGAAGAAGCAGAACTGGAATTGGATAATTATATTGAT
CAAGCTCTACTTGCAAATTTGATTCAAATTACGATTGTTCATGGGATTGGAACGGGTGTTATTCGAGAAATGGTACAGAA
AAAACTTCAAAAACACCGTCATATTAAATCTTATGAATATGCACCAATTAATGCTGGTGGCTCTGGAGCAACGATTGCTA
TTTTGAAGTAA

Domains

Predicted by InterProScan.

Smr domain (Smr)

(701-776)

MutS2 and Smr-associated SH3 domain (MSSS)

(634-672)

MutS domain V (MutS_V)

(326-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

42.621

100

0.432

Multiple sequence alignment