Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FGK96_RS09155 Genome accession   NZ_LR594036
Coordinates   1894203..1894694 (-) Length   163 a.a.
NCBI ID   WP_003083754.1    Uniprot ID   -
Organism   Streptococcus porcinus strain NCTC10710     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1892356..1893846 1894203..1894694 flank 357


Gene organization within MGE regions


Location: 1892356..1894694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK96_RS09145 (NCTC10710_01892) - 1892356..1893846 (+) 1491 WP_138083259.1 IS1182 family transposase -
  FGK96_RS09150 (NCTC10710_01893) rpsR 1893821..1894060 (-) 240 WP_002983142.1 30S ribosomal protein S18 -
  FGK96_RS09155 (NCTC10710_01894) ssb 1894203..1894694 (-) 492 WP_003083754.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18109.89 Da        Isoelectric Point: 4.9119

>NTDB_id=1127372 FGK96_RS09155 WP_003083754.1 1894203..1894694(-) (ssb) [Streptococcus porcinus strain NCTC10710]
MINNVVLVGRMTKDAELRYTPNQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSSNSYNSGGFNNASTNSNYSAPSQQTPNFGRDESPFGNSNPMEISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=1127372 FGK96_RS09155 WP_003083754.1 1894203..1894694(-) (ssb) [Streptococcus porcinus strain NCTC10710]
ATGATTAATAATGTAGTACTAGTTGGTCGCATGACCAAAGATGCAGAGCTCCGTTATACCCCAAACCAAGTAGCAGTAGC
TACTTTTACCCTTGCTGTCAATCGCACTTTCAAGAGCCAAAACGGGGAGCGTGAAGCAGATTTCATTAACTGTGTTATTT
GGCGCCAACCTGCTGAAAATTTAGCAAATTGGGCAAAAAAAGGTGCTTTAATTGGAATTACTGGTCGTATTCAGACTCGT
AATTATGAAAATCAACAGGGGCAACGTGTTTACGTAACGGAAGTGGTTGCGGATAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGCTCATCTAATTCTTATAATAGTGGTGGTTTTAATAACGCATCAACTAATAGTAATTATTCGGCTC
CTTCTCAACAAACACCTAACTTTGGTCGAGATGAAAGTCCATTTGGTAATTCAAATCCAATGGAAATTTCAGATGACGAT
CTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.302

100

0.626
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.382

100

0.62
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368
  ssbB/cilA Streptococcus pneumoniae TIGR4

54.128

66.871

0.362

Multiple sequence alignment