Detailed information NTG0112736

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: PFLUOLIPICF7_RS20050
• Genome accession: NZ_CP005975
• Coordinates: 4333317..4335542 (+)
• Length: 741 a.a.
• NCBI ID: WP_238986337.1
• Uniprot ID: -
• Organism: Pseudomonas simiae strain PICF7
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4328317..4340542

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PFLUOLIPICF7_RS20035 (PFLUOLIPICF7_20250)	-	4330584..4331312 (+)	729	WP_021492750.1	response regulator transcription factor	-
PFLUOLIPICF7_RS20040 (PFLUOLIPICF7_20255)	-	4331299..4332669 (+)	1371	WP_010209646.1	sensor histidine kinase	-
PFLUOLIPICF7_RS20045 (PFLUOLIPICF7_20260)	-	4332666..4333181 (-)	516	WP_021492748.1	DUF2062 domain-containing protein	-
PFLUOLIPICF7_RS20050 (PFLUOLIPICF7_20265)	comA	4333317..4335542 (+)	2226	WP_238986337.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
PFLUOLIPICF7_RS20055 (PFLUOLIPICF7_20270)	exbB	4335616..4336251 (+)	636	WP_010209649.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
PFLUOLIPICF7_RS20060 (PFLUOLIPICF7_20275)	-	4336248..4336676 (+)	429	WP_010209650.1	ExbD/TolR family protein	-
PFLUOLIPICF7_RS20065 (PFLUOLIPICF7_20280)	lpxK	4336676..4337686 (+)	1011	WP_045791941.1	tetraacyldisaccharide 4'-kinase	-
PFLUOLIPICF7_RS20070 (PFLUOLIPICF7_20285)	-	4337711..4337896 (+)	186	WP_003174668.1	Trm112 family protein	-
PFLUOLIPICF7_RS20075 (PFLUOLIPICF7_20290)	kdsB	4337893..4338657 (+)	765	WP_010209652.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PFLUOLIPICF7_RS20080 (PFLUOLIPICF7_20295)	-	4338657..4339121 (+)	465	WP_010209653.1	low molecular weight protein-tyrosine-phosphatase	-
PFLUOLIPICF7_RS20085 (PFLUOLIPICF7_20300)	murB	4339118..4340137 (+)	1020	WP_042572156.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 741 a.a.
• Molecular weight: 80470.50 Da
• Isoelectric Point: 11.0656

>NTDB_id=112736 PFLUOLIPICF7_RS20050 WP_238986337.1 4333317..4335542(+) (comA) [Pseudomonas simiae strain PICF7]
MRTGMFAFALGLLALRFLPALPPTGWLIALLVLALMLLPFRTYPLAFFLLGLSWACISAQWALDDRLRPALEGQTRWVEG
QVSGLPQQTGDGVRFVLTDSRSRNARLPKRIRVSWRGGPPVRSGERWRLAITLKRPAGLLNFHGFDQEAWLLAQRIGATG
TVKDGERLAPATAAWRDSVRQRLLAVDAQGREAGLIALVLGDGSGLAAADWQVLQDTGTVHLLVISGQHIGLLAGLIYGL
IAGLARYGFWPRTWPWLPWACGLAFTTALGYGLLAGFGVPVQRACVMVGLVLLWRWRLRHLGLWRPLLLALNGVLVLEPL
ASVQPGFWLSFAAVAVLILAYGGRLGPWSLWQAWTRPQWLIAIGLFPVLLVLGLPISLSAPFANLVAVPWISLVVLPLAL
LGSALLVLPFVGEGLLWLAGGALDALFNGLAWLAGRMPAWIPAEVPPGYWLVSLLGATLLLLPKGVPFRVLGWPMLLLAV
FPPRAPVPDGQVEVTQLDVGQGQSLILRTRHHTLLYDAGPRSGAFDLGARVVLPSLRKLGIGELDMLLLSHADADHAGGA
AAIAKGMPIKRVVGGETEGLPISLGTQPCVSGERWTWDGVTFELWQWPDAISGNAKSCVLQVQAKGERLLLTGDIDRAAE
QAMLASPLAVPTDWLQAPHHGSRSSSSWPFVERLAPRSVLISRGRSNAFGHPHPQVMARYQRLGSQVYDSAEQGAVRLRL
GAFAAPVVARSQRRFWRERLP

Nucleotide

• Length: 2226 bp

>NTDB_id=112736 PFLUOLIPICF7_RS20050 WP_238986337.1 4333317..4335542(+) (comA) [Pseudomonas simiae strain PICF7]
ATGAGGACAGGGATGTTCGCGTTTGCGCTGGGGTTGCTGGCCTTGCGCTTTTTACCGGCATTGCCGCCGACCGGTTGGCT
GATCGCCCTGCTGGTGTTGGCCTTGATGCTGTTGCCGTTTCGCACTTATCCCTTGGCGTTTTTTCTGTTGGGGCTGAGTT
GGGCCTGTATCAGCGCGCAGTGGGCGCTGGATGACCGTCTCAGGCCCGCGCTGGAGGGGCAAACACGCTGGGTGGAAGGG
CAGGTCAGCGGGCTGCCGCAACAGACGGGCGATGGCGTGCGCTTCGTACTCACCGACAGTCGGTCGCGTAACGCTCGGTT
GCCCAAGCGCATCCGGGTGTCCTGGCGCGGTGGGCCGCCCGTGCGCAGCGGTGAACGCTGGCGCCTGGCAATCACCCTCA
AGCGGCCGGCCGGGTTGCTGAACTTTCATGGGTTTGATCAGGAGGCCTGGCTGCTCGCCCAGCGCATCGGCGCCACGGGT
ACGGTAAAGGACGGAGAGCGCCTGGCCCCGGCTACCGCCGCCTGGCGTGACAGTGTGCGTCAGCGCCTGCTGGCGGTAGA
TGCCCAAGGCAGGGAGGCAGGCCTGATTGCCTTGGTGTTGGGCGATGGCTCTGGATTGGCGGCGGCTGATTGGCAGGTAC
TGCAGGACACCGGCACTGTGCACCTGCTGGTCATCTCCGGCCAGCACATCGGCTTGCTCGCTGGCTTGATCTACGGATTG
ATCGCCGGCCTGGCGCGCTATGGGTTCTGGCCTCGAACCTGGCCGTGGCTGCCGTGGGCCTGTGGGCTGGCGTTCACCAC
GGCATTGGGTTATGGCTTGCTGGCCGGGTTTGGCGTGCCGGTACAGCGCGCCTGTGTGATGGTTGGGTTGGTATTGTTGT
GGCGATGGCGCTTGCGTCATCTCGGGCTGTGGCGGCCGTTGTTGCTGGCGCTCAATGGGGTGCTGGTCCTGGAACCATTG
GCCAGTGTGCAGCCGGGTTTCTGGCTGTCATTTGCGGCGGTGGCGGTGCTGATCCTGGCGTATGGCGGACGGCTGGGGCC
GTGGAGCCTATGGCAGGCCTGGACCCGGCCGCAGTGGTTGATTGCCATCGGATTGTTTCCGGTCTTGCTGGTGTTGGGGT
TGCCCATTAGCCTGAGCGCACCATTCGCTAACCTGGTGGCGGTGCCATGGATCAGCCTGGTGGTATTGCCGTTGGCCCTG
TTGGGCAGCGCATTGCTGGTGCTGCCGTTTGTGGGGGAAGGATTGCTCTGGCTGGCGGGAGGGGCGCTGGATGCCTTGTT
TAACGGCTTGGCGTGGCTCGCCGGGCGGATGCCGGCCTGGATTCCGGCCGAAGTACCGCCGGGGTATTGGCTGGTGAGTC
TGCTGGGCGCCACGTTGCTCCTGCTGCCCAAGGGCGTGCCGTTTCGTGTGCTGGGCTGGCCGATGCTGTTGCTGGCGGTG
TTTCCACCGCGAGCGCCGGTGCCTGACGGGCAGGTGGAGGTGACGCAGCTTGACGTCGGCCAGGGGCAATCGCTGATTTT
GCGTACCCGCCATCACACCTTGCTGTACGACGCCGGCCCGCGCTCCGGAGCCTTTGACCTGGGGGCCCGCGTGGTACTGC
CATCTTTGCGAAAACTCGGGATAGGGGAGCTGGACATGCTGCTGCTCAGCCACGCCGACGCCGATCATGCCGGTGGCGCG
GCAGCCATTGCCAAAGGCATGCCGATCAAGCGCGTGGTGGGCGGAGAGACCGAAGGCCTGCCAATATCGCTCGGCACCCA
GCCTTGCGTCAGTGGCGAGCGCTGGACCTGGGATGGCGTGACCTTCGAACTCTGGCAATGGCCTGACGCTATCAGCGGCA
ACGCGAAGTCCTGCGTTTTGCAGGTGCAGGCCAAGGGTGAGCGCCTGTTGCTGACCGGTGATATTGACCGCGCAGCCGAA
CAGGCCATGCTCGCGTCCCCCCTTGCGGTGCCCACCGATTGGCTGCAGGCGCCGCACCATGGCAGTCGCAGTTCTTCGTC
CTGGCCCTTTGTGGAACGGCTTGCGCCGCGATCTGTGCTGATCTCGCGTGGGCGCAGCAACGCGTTCGGCCATCCCCATC
CGCAGGTGATGGCGCGTTACCAGCGGTTGGGCAGCCAGGTGTATGACTCTGCCGAGCAGGGCGCCGTGCGTCTGCGATTG
GGGGCTTTCGCAGCGCCGGTTGTTGCGCGCAGTCAACGCCGGTTCTGGCGCGAGCGGTTACCTTAG

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (19-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-664)

• Competence protein (Competence) (198-464)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	60.278	97.166	0.586
comA	Ralstonia pseudosolanacearum GMI1000	35.1	100	0.402