Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PFLUOLIPICF7_RS20055 Genome accession   NZ_CP005975
Coordinates   4335616..4336251 (+) Length   211 a.a.
NCBI ID   WP_010209649.1    Uniprot ID   A0A1N7UJE1
Organism   Pseudomonas simiae strain PICF7     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4330616..4341251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFLUOLIPICF7_RS20040 (PFLUOLIPICF7_20255) - 4331299..4332669 (+) 1371 WP_010209646.1 sensor histidine kinase -
  PFLUOLIPICF7_RS20045 (PFLUOLIPICF7_20260) - 4332666..4333181 (-) 516 WP_021492748.1 DUF2062 domain-containing protein -
  PFLUOLIPICF7_RS20050 (PFLUOLIPICF7_20265) comA 4333317..4335542 (+) 2226 WP_238986337.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PFLUOLIPICF7_RS20055 (PFLUOLIPICF7_20270) exbB 4335616..4336251 (+) 636 WP_010209649.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PFLUOLIPICF7_RS20060 (PFLUOLIPICF7_20275) - 4336248..4336676 (+) 429 WP_010209650.1 ExbD/TolR family protein -
  PFLUOLIPICF7_RS20065 (PFLUOLIPICF7_20280) lpxK 4336676..4337686 (+) 1011 WP_045791941.1 tetraacyldisaccharide 4'-kinase -
  PFLUOLIPICF7_RS20070 (PFLUOLIPICF7_20285) - 4337711..4337896 (+) 186 WP_003174668.1 Trm112 family protein -
  PFLUOLIPICF7_RS20075 (PFLUOLIPICF7_20290) kdsB 4337893..4338657 (+) 765 WP_010209652.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PFLUOLIPICF7_RS20080 (PFLUOLIPICF7_20295) - 4338657..4339121 (+) 465 WP_010209653.1 low molecular weight protein-tyrosine-phosphatase -
  PFLUOLIPICF7_RS20085 (PFLUOLIPICF7_20300) murB 4339118..4340137 (+) 1020 WP_042572156.1 UDP-N-acetylmuramate dehydrogenase -
  PFLUOLIPICF7_RS20090 (PFLUOLIPICF7_20305) - 4340200..4340871 (-) 672 WP_010209655.1 Bax inhibitor-1/YccA family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22843.03 Da        Isoelectric Point: 7.3615

>NTDB_id=112737 PFLUOLIPICF7_RS20055 WP_010209649.1 4335616..4336251(+) (exbB) [Pseudomonas simiae strain PICF7]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGAGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=112737 PFLUOLIPICF7_RS20055 WP_010209649.1 4335616..4336251(+) (exbB) [Pseudomonas simiae strain PICF7]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGCTCTATCGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGCCGCGTTACCCCCGAGCATCTGCTGGGGCAGGTCTGGGGCTGGATCAAGAACA
AGCAACTGGACAAGGAAAAGCTCAAGGAACTGCGCGCCAACTCCCCGTTGGGTGAAATCCTTGCTGCAGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAAGAGGCCGCCGCCCGCGTCATTCATGAGCTTGAGCGTTATAT
CAATGCTCTCGGCACCATCGCCGCGATGGCGCCGTTGCTCGGCTTGCTCGGCACAGTGCTGGGCATGATCGATATTTTCA
GCTCATTCATGGGCGCCGGCATGACCACCAACGCGGCCGTACTGGCCGGCGGTATCTCCAAAGCGCTGATCACCACAGCC
GCAGGCTTGATGGTGGGTATTCCTTCGGTGTTCTTCCACCGATTCCTGCAACGTCGCATTGATGAGCTGGTGGTCGGCAT
GGAACAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAAGGCGACCGTGACGTCGACCTGGTTGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1N7UJE1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.36

100

0.844

Multiple sequence alignment