Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   LG36_RS08215 Genome accession   NZ_CP009472
Coordinates   1721136..1723112 (-) Length   658 a.a.
NCBI ID   WP_038601550.1    Uniprot ID   -
Organism   Lactococcus lactis strain AI06     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1716136..1728112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG36_RS08190 (LG36_1569) dapA 1716675..1717568 (-) 894 WP_038601543.1 4-hydroxy-tetrahydrodipicolinate synthase -
  LG36_RS08195 (LG36_1570) - 1717913..1718368 (-) 456 WP_038601545.1 NUDIX hydrolase -
  LG36_RS08200 (LG36_1571) - 1718379..1719455 (-) 1077 WP_038601547.1 aspartate-semialdehyde dehydrogenase -
  LG36_RS08205 (LG36_1572) - 1719550..1720413 (-) 864 WP_003129417.1 MIP/aquaporin family protein -
  LG36_RS08210 (LG36_1573) - 1720787..1721041 (-) 255 WP_038601548.1 hypothetical protein -
  LG36_RS08215 (LG36_1574) recP/tkt 1721136..1723112 (-) 1977 WP_038601550.1 transketolase Machinery gene
  LG36_RS08220 (LG36_1575) - 1723294..1724679 (-) 1386 WP_038601552.1 PTS ascorbate transporter subunit IIC -
  LG36_RS08225 (LG36_1576) - 1724739..1725038 (-) 300 WP_012898229.1 PTS sugar transporter subunit IIB -
  LG36_RS08230 (LG36_1577) - 1725040..1726980 (-) 1941 WP_038601554.1 PTS sugar transporter subunit IIA -
  LG36_RS08235 (LG36_1578) - 1727154..1727795 (-) 642 WP_038601557.1 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 71652.81 Da        Isoelectric Point: 4.8771

>NTDB_id=112737 LG36_RS08215 WP_038601550.1 1721136..1723112(-) (recP/tkt) [Lactococcus lactis strain AI06]
MFDTTDQLAVNTIRTLSLDAIQKANSGHPGLPMGSAPMAYVLWSKFLNVNPKTSRKWSNRDRFVLSAGHGSAMLYSLLHL
AGYNVTTDDLKGFRQWQSKTPGHPEVNHTDGVEATTGPLGQGIANAVGMAMAEAHLAAQYNKPGFDIVDHYTYALNGDGD
LMEGVSQEAASLAGKLKLGKLILFYDSNNISLDGDLSMSFIDDIQKRFESYGWQHLLVKDGNDLEEIAAAVEVAKAEKSK
PTIIEVKTVIGFGAEKQGTSAVHGAPLGAEGVAFAKKAYGWNYPEFTVPEEVSKRFLETTVARGEAMEQVWRSTFDDYSE
KYPELAEQYAKAFENETPDLTLTKHEMETSKASRVTSQEAIQELSAQMPNLWGGSADLSASNNTMVKVEEDFMPDNYAGR
NIWFGVREFAMGAIMNGIALHGGTRVYGGTFFVFSNYMLPSVRMAALQSLPVTYVWTHDSIAVGEDGPTHEPVEQLASVR
SIPNLDVIRPADGNEVVAAWRRAASSKSRPTALILTRQNLPVLPDTYELAEEGLNRGAYILSKEEGKLEGIIIATGSEVA
LALEAKKTLGSGIRVVSMPSMNIFDEQDAAYREEILPKAVRRRLAIEAGTSYGWGKYVGLDGATVTVDTWGASAPANIVL
PAYGFTAENVVKAYKELD

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=112737 LG36_RS08215 WP_038601550.1 1721136..1723112(-) (recP/tkt) [Lactococcus lactis strain AI06]
ATGTTTGATACTACTGATCAATTGGCTGTAAATACGATTCGTACTCTATCATTAGATGCGATTCAAAAAGCAAATTCAGG
ACATCCTGGACTTCCAATGGGCTCTGCACCAATGGCTTATGTACTTTGGAGCAAATTTCTTAATGTGAACCCTAAGACAA
GTCGTAAATGGTCAAATCGTGACCGTTTTGTCTTGTCTGCTGGTCATGGTTCTGCAATGTTATATAGTTTGTTACATTTG
GCAGGTTATAATGTAACGACTGATGATTTAAAAGGTTTCCGTCAATGGCAATCAAAAACACCAGGACATCCAGAAGTTAA
TCATACAGATGGTGTTGAAGCAACAACAGGTCCTTTAGGACAAGGAATTGCCAATGCTGTCGGAATGGCAATGGCTGAAG
CACATTTAGCTGCACAATACAATAAACCTGGTTTTGATATTGTTGATCATTACACTTATGCCTTAAATGGTGATGGTGAT
TTGATGGAAGGTGTCTCACAAGAAGCAGCTTCACTTGCAGGTAAATTGAAACTTGGTAAATTAATTCTTTTCTATGATTC
AAATAATATTTCTCTAGATGGTGACTTATCAATGTCATTTATTGATGATATTCAAAAACGTTTTGAATCATATGGCTGGC
AACATTTATTGGTAAAAGATGGAAATGATTTAGAAGAAATCGCAGCAGCTGTTGAAGTGGCTAAAGCTGAAAAATCTAAA
CCAACAATCATTGAAGTTAAAACAGTCATTGGTTTTGGTGCCGAAAAACAAGGAACTTCAGCAGTTCACGGAGCTCCTCT
TGGAGCTGAAGGTGTTGCATTTGCCAAGAAAGCATATGGTTGGAATTACCCTGAATTTACAGTTCCTGAAGAAGTATCAA
AACGCTTTTTAGAAACGACAGTTGCGCGTGGTGAAGCAATGGAGCAAGTATGGCGCAGTACTTTTGATGATTATTCTGAA
AAATACCCTGAGCTTGCTGAGCAATACGCAAAAGCTTTTGAAAATGAAACGCCAGATCTTACTTTGACCAAGCATGAAAT
GGAAACAAGCAAGGCCAGCCGTGTAACTTCACAAGAAGCTATCCAAGAATTATCAGCTCAAATGCCAAATCTTTGGGGTG
GGTCTGCTGACCTTTCGGCTTCAAATAATACAATGGTTAAAGTTGAAGAGGACTTCATGCCAGATAACTATGCTGGACGT
AATATTTGGTTTGGTGTACGTGAATTTGCAATGGGAGCCATTATGAATGGGATTGCTTTGCATGGTGGAACTCGTGTCTA
TGGCGGAACATTCTTCGTCTTCTCAAACTACATGCTTCCTTCTGTTCGGATGGCTGCTCTACAAAGCTTACCAGTTACTT
ATGTTTGGACACATGATTCCATTGCTGTTGGGGAAGATGGTCCAACTCACGAACCTGTTGAACAATTAGCTTCCGTTCGC
TCAATTCCTAATTTGGATGTAATTCGTCCAGCTGATGGAAATGAAGTAGTGGCTGCATGGCGTCGTGCTGCATCAAGTAA
AAGCCGTCCAACCGCACTTATTTTGACTCGTCAAAATCTTCCAGTTTTACCTGATACTTATGAATTGGCTGAAGAAGGTC
TGAATCGTGGGGCTTATATTCTTTCAAAAGAAGAAGGAAAACTTGAAGGAATCATCATTGCGACTGGTTCAGAAGTAGCA
TTAGCTCTTGAAGCTAAGAAGACTTTAGGTTCTGGCATTCGTGTCGTTTCAATGCCTTCAATGAATATTTTTGACGAACA
AGATGCAGCTTATCGCGAAGAAATTTTACCAAAAGCTGTAAGACGTCGTTTAGCGATTGAAGCTGGTACAAGTTACGGAT
GGGGTAAATATGTTGGACTTGATGGTGCAACAGTTACAGTAGATACTTGGGGCGCTTCGGCACCAGCAAATATCGTTCTT
CCAGCTTACGGATTTACTGCTGAAAATGTAGTTAAAGCATACAAAGAGCTTGACTAA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(6-338)

Transketolase, pyrimidine binding domain (Transket_pyr)

(354-521)

Transketolase, C-terminal domain (Transketolase_C)

(551-650)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

55.255

100

0.559

Multiple sequence alignment