Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   FGK96_RS07575 Genome accession   NZ_LR594036
Coordinates   1571210..1571896 (-) Length   228 a.a.
NCBI ID   WP_138082786.1    Uniprot ID   -
Organism   Streptococcus porcinus strain NCTC10710     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1566210..1576896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK96_RS07555 (NCTC10710_01562) dnaI 1566924..1567826 (-) 903 WP_138082780.1 primosomal protein DnaI -
  FGK96_RS07560 (NCTC10710_01563) - 1567827..1569014 (-) 1188 WP_138082782.1 DnaD domain protein -
  FGK96_RS07565 (NCTC10710_01564) nrdR 1569001..1569495 (-) 495 WP_003084743.1 transcriptional regulator NrdR -
  FGK96_RS07570 (NCTC10710_01565) - 1569719..1571200 (-) 1482 WP_138082784.1 HAMP domain-containing sensor histidine kinase -
  FGK96_RS07575 (NCTC10710_01566) covR 1571210..1571896 (-) 687 WP_138082786.1 two-component system response regulator CovR Regulator
  FGK96_RS07580 (NCTC10710_01567) - 1572114..1572647 (-) 534 WP_138082788.1 YceD family protein -
  FGK96_RS07585 (NCTC10710_01568) htpX 1572843..1573739 (-) 897 WP_138082790.1 zinc metalloprotease HtpX -
  FGK96_RS07590 (NCTC10710_01569) - 1573773..1574327 (-) 555 WP_138082792.1 LemA family protein -
  FGK96_RS07595 (NCTC10710_01570) rsmG 1574476..1575189 (+) 714 WP_138082794.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  FGK96_RS07600 (NCTC10710_01571) ktrB 1575274..1576650 (+) 1377 WP_138082796.1 potassium uptake transporter channel subunit KtrB -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 26609.58 Da        Isoelectric Point: 4.6541

>NTDB_id=1127357 FGK96_RS07575 WP_138082786.1 1571210..1571896(-) (covR) [Streptococcus porcinus strain NCTC10710]
MTKKILIVEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLMLPEMDGFEVTRRLQTEKTTYIMMMT
ARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDIETEKKAPNQGVYRDLVLNPQNRSVNRGDDEISLTKREY
DLLNILMTNMNRVMTREELLSNVWKYDEAVETNVVDVYVRYLRGKIDMPGRESYIQTVRGMGYVIREK

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1127357 FGK96_RS07575 WP_138082786.1 1571210..1571896(-) (covR) [Streptococcus porcinus strain NCTC10710]
ATGACAAAGAAAATTCTAATTGTGGAAGATGAAAAAAATCTCGCACGGTTTGTCTCACTTGAACTTCAACATGAAGGTTA
CGAGGTGACAGTAGAAGTAAACGGTCGTGAAGGCCTAGAAACAGCGTTAGAAAAAGATTTTGATTTAATTTTACTAGATT
TAATGCTTCCAGAAATGGACGGTTTTGAGGTTACTCGTCGTCTTCAAACAGAGAAAACTACCTATATCATGATGATGACT
GCACGTGATTCTATTATGGACGTCGTGGCAGGTCTCGATCGCGGTGCAGATGATTATATTGTCAAACCATTCGCTATTGA
AGAGTTGTTAGCCCGTATTCGGGCAATTTTCCGCCGTCAAGATATTGAAACTGAAAAGAAAGCACCTAATCAAGGTGTTT
ATCGCGATCTAGTTTTGAACCCTCAAAATAGATCCGTGAACCGTGGCGATGATGAAATTTCACTAACAAAACGTGAGTAT
GATCTCTTGAATATCCTTATGACAAATATGAATCGTGTCATGACTCGAGAAGAGTTGCTTTCTAATGTTTGGAAATATGA
TGAAGCCGTTGAAACAAATGTTGTGGATGTTTACGTTCGTTATCTTCGTGGCAAAATTGACATGCCTGGTCGTGAATCTT
ATATCCAGACTGTTCGTGGCATGGGTTATGTTATCCGCGAAAAATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

82.533

100

0.829
  covR Lactococcus lactis subsp. lactis strain DGCC12653

66.52

99.561

0.662
  vicR Streptococcus mutans UA159

44.156

100

0.447
  micA Streptococcus pneumoniae Cp1015

43.478

100

0.439

Multiple sequence alignment