Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaH   Type   Regulator
Locus tag   FGK96_RS04010 Genome accession   NZ_LR594036
Coordinates   826552..827871 (+) Length   439 a.a.
NCBI ID   WP_138081630.1    Uniprot ID   -
Organism   Streptococcus porcinus strain NCTC10710     
Function   Required for optimal comC expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 821552..832871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK96_RS03990 (NCTC10710_00819) pstB 821650..822408 (+) 759 WP_138081624.1 phosphate ABC transporter ATP-binding protein PstB -
  FGK96_RS03995 (NCTC10710_00820) phoU 822436..823089 (+) 654 WP_007893157.1 phosphate signaling complex protein PhoU -
  FGK96_RS04000 (NCTC10710_00821) - 823164..825713 (+) 2550 WP_138081626.1 M1 family metallopeptidase -
  FGK96_RS04005 (NCTC10710_00822) ciaR 825885..826559 (+) 675 WP_138081628.1 response regulator transcription factor Regulator
  FGK96_RS04010 (NCTC10710_00823) ciaH 826552..827871 (+) 1320 WP_138081630.1 sensor histidine kinase Regulator
  FGK96_RS04015 (NCTC10710_00824) rpsT 828149..828391 (-) 243 WP_081461234.1 30S ribosomal protein S20 -
  FGK96_RS04020 (NCTC10710_00825) coaA 828451..829371 (-) 921 WP_138081632.1 type I pantothenate kinase -
  FGK96_RS04025 (NCTC10710_00826) - 829638..830228 (+) 591 WP_138081634.1 class I SAM-dependent methyltransferase -
  FGK96_RS04030 (NCTC10710_00827) - 830225..831502 (+) 1278 WP_138081636.1 pyrimidine-nucleoside phosphorylase -
  FGK96_RS04035 (NCTC10710_00828) deoC 831512..832174 (+) 663 WP_138081638.1 deoxyribose-phosphate aldolase -
  FGK96_RS04040 (NCTC10710_00829) - 832161..832550 (+) 390 WP_138081640.1 cytidine deaminase -

Sequence

Protein


Download         Length: 439 a.a.        Molecular weight: 50148.58 Da        Isoelectric Point: 8.8181

>NTDB_id=1127342 FGK96_RS04010 WP_138081630.1 826552..827871(+) (ciaH) [Streptococcus porcinus strain NCTC10710]
MTKYRAIITSDNFDRFFHFFAVFTGIFVVMTVIILQIMKVGGYSSVDTSLTAVATHSTLYANRTMERISSFYFDGQDLNF
KANLDDLKGKNSDQPVANTDIILFNANGMVINTFDALSNFQNFSFKKSDLNEIKTRKLVNYYGHEEKFHTITVRVHSNNY
PSVAYLMAVVNVEQSEKTNERYEKIIIIIMILFWLISILASIYLANWSSKPILESYEKQKMFVENASHELRTPLAVLQNR
LETLFRKPNESILDNSEAIASSLEEVRNMRILTTNLLNLARRDDGIKPEIVEIPSHFFDGIFDNYKLIAEEYGKGFESVN
TVTKPIRMDKSLLKQLMTILFDNAIKYTDESGFIKIIVRNTDKHFFITVEDNGPGITDADKKKIFDRFYRVDKARTRSHG
GFGLGLSLAQQIVTSLKGTILVNDNKGKGSVFEVKLPLN

Nucleotide


Download         Length: 1320 bp        

>NTDB_id=1127342 FGK96_RS04010 WP_138081630.1 826552..827871(+) (ciaH) [Streptococcus porcinus strain NCTC10710]
ATGACTAAATATAGAGCTATTATTACATCAGATAATTTTGATCGTTTCTTTCATTTTTTTGCCGTTTTTACAGGTATATT
TGTTGTGATGACGGTTATTATTTTACAAATTATGAAAGTGGGGGGTTACTCATCAGTAGATACAAGTTTGACAGCTGTGG
CGACTCATTCAACTCTCTATGCTAACCGAACGATGGAAAGAATTTCTTCTTTCTATTTTGATGGACAAGATTTAAATTTC
AAAGCAAATCTAGATGATTTAAAAGGGAAAAACAGTGATCAACCTGTCGCAAATACCGATATTATTCTATTTAATGCTAA
TGGTATGGTAATTAATACCTTTGATGCCCTTTCTAATTTCCAAAATTTCTCTTTTAAAAAGAGTGATTTAAATGAAATCA
AAACTAGAAAACTTGTTAATTACTATGGTCATGAGGAAAAATTCCATACTATTACCGTTAGAGTGCACTCTAATAATTAC
CCATCAGTTGCCTATTTAATGGCTGTTGTTAATGTAGAGCAATCTGAAAAAACTAATGAACGCTATGAAAAAATAATTAT
TATAATCATGATTTTATTTTGGCTTATTTCTATTTTGGCAAGTATCTATTTAGCCAATTGGAGTAGCAAACCAATTCTTG
AAAGCTATGAAAAACAGAAGATGTTTGTTGAAAATGCCAGTCATGAATTAAGGACGCCTTTGGCCGTACTCCAAAATCGT
TTAGAAACACTTTTTCGCAAGCCCAACGAAAGTATCTTAGATAATAGTGAAGCAATTGCCTCAAGCTTAGAAGAGGTTCG
TAATATGAGAATATTGACGACGAATCTTTTGAATTTAGCTCGTCGCGATGATGGCATTAAACCTGAAATAGTAGAGATAC
CAAGTCATTTTTTTGATGGTATTTTTGATAATTATAAATTAATTGCTGAAGAATATGGAAAAGGCTTTGAGTCTGTTAAT
ACCGTTACAAAGCCAATCAGAATGGATAAATCTTTATTAAAACAGTTAATGACAATTTTATTTGATAACGCGATTAAATA
TACAGATGAGTCAGGTTTTATTAAAATCATTGTTAGAAATACGGATAAACATTTCTTTATTACTGTTGAAGATAATGGAC
CAGGTATTACAGATGCCGACAAAAAGAAAATATTTGACCGTTTTTATCGAGTAGATAAAGCTAGAACAAGGAGTCATGGC
GGCTTTGGATTAGGATTATCACTTGCTCAACAAATCGTTACTTCTTTAAAGGGGACTATTCTTGTGAATGATAATAAAGG
CAAGGGTAGTGTGTTTGAGGTTAAACTTCCACTAAATTAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(220-285)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(329-438)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus mutans UA159

56.364

100

0.565
  ciaH Streptococcus pneumoniae Rx1

48.758

100

0.492
  ciaH Streptococcus pneumoniae D39

48.758

100

0.492
  ciaH Streptococcus pneumoniae R6

48.758

100

0.492
  ciaH Streptococcus pneumoniae TIGR4

48.758

100

0.492

Multiple sequence alignment