Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   LG36_RS06940 Genome accession   NZ_CP009472
Coordinates   1443041..1443721 (-) Length   226 a.a.
NCBI ID   WP_038601279.1    Uniprot ID   -
Organism   Lactococcus lactis strain AI06     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1438041..1448721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG36_RS06915 (LG36_1314) - 1438244..1438615 (-) 372 WP_038601270.1 hypothetical protein -
  LG36_RS06920 (LG36_1315) - 1438612..1439289 (-) 678 WP_236620776.1 hypothetical protein -
  LG36_RS06925 (LG36_1316) - 1439601..1441508 (-) 1908 WP_038601273.1 ABC-F family ATP-binding cassette domain-containing protein -
  LG36_RS06930 (LG36_1317) - 1441686..1442078 (-) 393 WP_038601276.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  LG36_RS06935 (LG36_1318) - 1442304..1442954 (+) 651 WP_038601278.1 redox-sensing transcriptional repressor Rex -
  LG36_RS06940 (LG36_1319) radC 1443041..1443721 (-) 681 WP_038601279.1 DNA repair protein RadC Machinery gene
  LG36_RS06945 (LG36_1320) glmS 1443852..1445669 (-) 1818 WP_038601280.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  LG36_RS06950 (LG36_1321) - 1445850..1446506 (-) 657 WP_038601281.1 phosphatase PAP2 family protein -
  LG36_RS06955 (LG36_1322) - 1446513..1447838 (-) 1326 WP_038601282.1 cell wall metabolism sensor histidine kinase WalK -
  LG36_RS06960 (LG36_1323) - 1447842..1448357 (-) 516 WP_029343809.1 DUF2127 domain-containing protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25900.77 Da        Isoelectric Point: 7.9403

>NTDB_id=112731 LG36_RS06940 WP_038601279.1 1443041..1443721(-) (radC) [Lactococcus lactis strain AI06]
MYELRENPYPMQPRERLEFLGEECLSDVELLAILLRTGTKKYSSLNLALEILQHFETLDNLRKASINELREISGIGLAKS
IEIRAMIEFGKRIQTTNRKRYGQVLSSKEYGLSLAFEMQNFEQEHLVATYLDGQNRIIEKKTIFIGAVNHATASPREILY
HAIKNLSVGLLVAHNHPSGNLRPSQADKIFTYKIKKSCEDVGINFIDHIIVGAGNYFSFREEEIRK

Nucleotide


Download         Length: 681 bp        

>NTDB_id=112731 LG36_RS06940 WP_038601279.1 1443041..1443721(-) (radC) [Lactococcus lactis strain AI06]
ATGTATGAACTAAGAGAAAATCCATATCCGATGCAACCTAGAGAACGCTTAGAATTTTTAGGAGAAGAGTGCTTATCTGA
TGTTGAGCTGTTAGCGATATTATTGCGGACAGGCACTAAGAAATACTCATCATTAAATTTGGCCTTAGAAATCCTTCAAC
ATTTTGAAACTTTGGATAATTTGCGCAAAGCTTCGATTAATGAACTCAGAGAAATTTCAGGCATTGGACTGGCAAAATCC
ATTGAAATTCGAGCGATGATTGAATTTGGAAAAAGGATACAGACCACTAATAGAAAACGTTATGGTCAAGTTTTGAGTTC
CAAAGAATATGGCTTGAGTCTTGCTTTTGAAATGCAAAATTTTGAACAAGAGCATCTTGTGGCGACTTATTTAGATGGTC
AAAATCGAATTATTGAAAAAAAGACAATTTTTATAGGGGCGGTTAATCATGCAACTGCAAGCCCAAGAGAGATTCTTTAT
CATGCAATAAAAAATCTCTCAGTAGGACTGTTAGTTGCACATAATCATCCCTCAGGAAATTTACGACCCAGTCAGGCTGA
TAAAATATTTACTTACAAAATAAAAAAATCTTGTGAGGATGTGGGAATCAATTTTATTGATCATATTATTGTAGGGGCTG
GTAATTATTTTAGTTTTCGGGAAGAAGAAATCCGAAAATGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(115-223)

UPF0758 N-terminal (UPF0758_N)

(8-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

45.946

98.23

0.451
  radC Streptococcus pneumoniae R6

45.946

98.23

0.451
  radC Streptococcus pneumoniae D39

45.946

98.23

0.451
  radC Streptococcus gordonii str. Challis substr. CH1

45.495

98.23

0.447
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

40.09

98.23

0.394

Multiple sequence alignment