Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/celB   Type   Machinery gene
Locus tag   FGL04_RS07210 Genome accession   NZ_LR594035
Coordinates   1394291..1396177 (-) Length   628 a.a.
NCBI ID   WP_333473204.1    Uniprot ID   -
Organism   Streptococcus pseudoporcinus strain NCTC5385     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1389291..1401177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL04_RS07190 (NCTC5385_01568) queA 1389890..1390918 (+) 1029 WP_138068711.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  FGL04_RS07195 (NCTC5385_01569) - 1391121..1392167 (-) 1047 WP_138068712.1 serine hydrolase -
  FGL04_RS07200 (NCTC5385_01570) sodA 1392458..1393066 (-) 609 WP_138068713.1 superoxide dismutase SodA -
  FGL04_RS07205 (NCTC5385_01571) holA 1393185..1394216 (-) 1032 WP_138068714.1 DNA polymerase III subunit delta -
  FGL04_RS07210 (NCTC5385_01572) comEC/celB 1394291..1396177 (-) 1887 WP_333473204.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  FGL04_RS11315 - 1396197..1396343 (-) 147 WP_333473205.1 hypothetical protein -
  FGL04_RS07215 (NCTC5385_01574) - 1396516..1397202 (-) 687 WP_138068715.1 helix-hairpin-helix domain-containing protein -
  FGL04_RS07220 (NCTC5385_01575) - 1397270..1398010 (-) 741 WP_138068716.1 lysophospholipid acyltransferase family protein -
  FGL04_RS07225 (NCTC5385_01576) - 1398157..1398906 (+) 750 WP_138068717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  FGL04_RS07235 (NCTC5385_01577) - 1399134..1399415 (+) 282 WP_171011253.1 GIY-YIG nuclease family protein -

Sequence

Protein


Download         Length: 628 a.a.        Molecular weight: 72046.49 Da        Isoelectric Point: 9.7317

>NTDB_id=1127303 FGL04_RS07210 WP_333473204.1 1394291..1396177(-) (comEC/celB) [Streptococcus pseudoporcinus strain NCTC5385]
MKSERELVFFRENRDYLDILSEIPLEEAETVRNFSGFDYRAFLKYQGIYRTGYIKGLSHLSKSPARNLIEIMRTWRRQAI
IICQKEFPKPMSDYMTGLLFGYLDKSFGEMTQIYSQLGIIHLFALSGMQVTFFLNYFRKLLVIVGVPRDYFPYLDILFSL
FYALMTGFSISVLRSLCQSNLRNFGVKGLDNFALAFLLIFICDRQFLLSIGGVLSFAYAFFITILHFENFEGIRRKVYET
FALNLCLLPFLMSYFSQFNAVAIFLTILFSFLFDNIILPILCVTFLLSPLIKCSIFNSLFLLMEKLVHLIGSYTSKPITF
GNPNLMQFFLLILVIALFVNQLSKKKAIFLPASIIVLLLLSVRTPFLNEITLVDVGQGDSILIRDMDNKTLLIDVGGVHH
FDGKKAWQKKYRQANAEKTLIPYLKSRGVTKIDYLLLTHTDNDHVGDMEEVAKNFEVKEILTSQGSLKNMSFVNRLRAMQ
IKTKIVKAGDRLSIMGSYLQVLYPWSIGDGKNNDSLILYGHLLGKNFLFTGDIEADGEKALIQRYPNLKVDILKVGHHGS
KGSSTEDFLNTVSTKIALISAGKNNAFRHPNPETLERFRERHVKVYRTDQQGAIRFTGRSQWKIETCR

Nucleotide


Download         Length: 1887 bp        

>NTDB_id=1127303 FGL04_RS07210 WP_333473204.1 1394291..1396177(-) (comEC/celB) [Streptococcus pseudoporcinus strain NCTC5385]
ATGAAAAGTGAGAGGGAATTGGTCTTTTTTAGGGAAAACAGAGACTATCTAGACATTCTTTCTGAAATACCATTGGAAGA
GGCTGAGACCGTTCGCAATTTTTCAGGGTTTGATTACCGAGCATTTCTAAAATATCAAGGGATATATCGTACGGGCTATA
TAAAAGGATTAAGTCACTTATCAAAAAGTCCAGCTAGGAATCTAATAGAAATAATGCGAACCTGGCGACGTCAGGCTATC
ATAATATGTCAAAAAGAATTTCCAAAACCAATGTCGGATTATATGACAGGACTTTTATTTGGCTATTTAGATAAATCTTT
TGGTGAAATGACCCAGATTTATAGTCAACTAGGGATTATTCATCTTTTTGCCTTATCAGGAATGCAAGTTACTTTTTTCC
TTAACTATTTTCGTAAGCTATTGGTCATTGTAGGTGTTCCTAGAGACTACTTTCCTTATTTAGATATTCTGTTTTCTTTG
TTTTATGCTCTTATGACAGGTTTTAGCATTTCTGTTTTACGAAGTTTGTGTCAAAGTAATCTAAGAAATTTTGGTGTTAA
GGGGCTTGATAATTTTGCTCTGGCTTTCTTGCTTATCTTTATTTGCGATCGTCAGTTTCTGCTGAGCATTGGTGGCGTTC
TATCCTTTGCCTATGCTTTTTTTATTACAATTCTTCATTTTGAAAATTTTGAAGGGATTAGGAGAAAAGTTTACGAAACT
TTCGCTTTAAATCTTTGTCTCCTACCATTTTTAATGAGTTATTTTTCACAATTTAATGCAGTAGCTATTTTCCTAACCAT
TCTTTTTTCTTTTCTATTTGATAATATTATCCTGCCTATCTTGTGCGTAACCTTTCTTTTATCGCCATTGATAAAATGCA
GTATCTTTAATAGTTTGTTTTTGCTTATGGAAAAACTAGTTCATCTTATTGGAAGCTATACTAGTAAACCGATTACTTTT
GGGAATCCAAATTTAATGCAATTTTTCTTACTTATCCTAGTTATTGCTCTTTTTGTCAATCAACTCTCTAAAAAGAAAGC
TATTTTCTTACCGGCTTCTATAATTGTCTTACTCTTATTGAGTGTGAGAACCCCGTTCCTTAATGAAATTACTCTTGTAG
ATGTTGGACAAGGAGATAGTATTTTAATTCGAGATATGGATAACAAAACCCTTTTAATTGATGTCGGTGGTGTACACCAT
TTTGACGGGAAAAAGGCTTGGCAAAAAAAGTATAGACAAGCAAATGCTGAGAAAACTCTGATTCCCTATCTTAAGTCAAG
GGGAGTTACAAAAATTGATTATTTACTACTGACTCATACCGATAATGATCATGTCGGAGATATGGAGGAAGTTGCCAAAA
ACTTTGAAGTTAAAGAGATTTTAACGAGTCAGGGAAGCTTAAAAAATATGAGTTTTGTCAACAGGCTTAGAGCTATGCAA
ATTAAAACAAAAATAGTTAAGGCTGGTGACCGACTTTCTATCATGGGGAGTTATTTACAGGTTCTTTATCCATGGTCTAT
AGGAGATGGTAAAAATAATGACTCTTTAATTTTATATGGCCATTTATTAGGGAAAAATTTTCTTTTTACAGGTGATATTG
AAGCAGACGGTGAAAAAGCTTTAATTCAAAGGTATCCAAACTTAAAAGTTGATATTTTAAAAGTAGGCCATCATGGTTCA
AAAGGATCCTCTACTGAAGATTTTCTAAATACAGTATCAACGAAGATTGCTTTGATTTCCGCTGGTAAAAATAATGCTTT
TAGGCATCCTAATCCCGAAACTTTAGAACGCTTTCGAGAGCGACATGTCAAGGTCTATCGAACAGATCAACAAGGTGCCA
TACGATTTACCGGACGGAGCCAGTGGAAAATTGAGACTTGCCGCTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(374-460)

Competence protein (Competence)

(98-341)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/celB Streptococcus mitis SK321

48.967

100

0.49
  comEC/celB Streptococcus mitis NCTC 12261

48.408

100

0.484
  comEC/celB Streptococcus pneumoniae Rx1

47.536

100

0.476
  comEC/celB Streptococcus pneumoniae D39

47.536

100

0.476
  comEC/celB Streptococcus pneumoniae R6

47.536

100

0.476
  comEC/celB Streptococcus pneumoniae TIGR4

47.377

100

0.475
  comEC Lactococcus lactis subsp. cremoris KW2

45.411

100

0.457

Multiple sequence alignment