Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | FGL04_RS01790 | Genome accession | NZ_LR594035 |
| Coordinates | 317039..317530 (+) | Length | 163 a.a. |
| NCBI ID | WP_007892149.1 | Uniprot ID | A0A4U9Y9J5 |
| Organism | Streptococcus pseudoporcinus strain NCTC5385 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 312039..322530
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FGL04_RS01770 (NCTC5385_00374) | - | 312052..314385 (+) | 2334 | WP_138068011.1 | endonuclease MutS2 | - |
| FGL04_RS01775 (NCTC5385_00375) | trxA | 314503..314817 (+) | 315 | WP_007892545.1 | thioredoxin | - |
| FGL04_RS01780 (NCTC5385_00376) | mutY | 314925..316067 (-) | 1143 | WP_138068012.1 | A/G-specific adenine glycosylase | - |
| FGL04_RS01785 (NCTC5385_00377) | rpsF | 316725..317015 (+) | 291 | WP_138068013.1 | 30S ribosomal protein S6 | - |
| FGL04_RS01790 (NCTC5385_00378) | ssbA | 317039..317530 (+) | 492 | WP_007892149.1 | single-stranded DNA-binding protein | Machinery gene |
| FGL04_RS01795 (NCTC5385_00379) | rpsR | 317672..317911 (+) | 240 | WP_138068014.1 | 30S ribosomal protein S18 | - |
| FGL04_RS01800 (NCTC5385_00380) | - | 318327..318995 (-) | 669 | WP_138068015.1 | DUF1129 domain-containing protein | - |
| FGL04_RS01805 (NCTC5385_00381) | - | 319118..320062 (-) | 945 | WP_007892119.1 | magnesium transporter CorA family protein | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 18156.90 Da Isoelectric Point: 4.9119
>NTDB_id=1127281 FGL04_RS01790 WP_007892149.1 317039..317530(+) (ssbA) [Streptococcus pseudoporcinus strain NCTC5385]
MINNVVLVGRMTKDAELRYTPNQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSSNSYNSGGFNNTSTNNNYSASSQQTPNFGRDESPFGNSNPMEISDDD
LPF
MINNVVLVGRMTKDAELRYTPNQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSSNSYNSGGFNNTSTNNNYSASSQQTPNFGRDESPFGNSNPMEISDDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=1127281 FGL04_RS01790 WP_007892149.1 317039..317530(+) (ssbA) [Streptococcus pseudoporcinus strain NCTC5385]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAAGATGCAGAGCTCCGTTATACACCAAACCAGGTAGCAGTTGC
TACTTTTACCCTTGCTGTAAATCGCACTTTTAAGAGCCAAAATGGGGAGCGTGAAGCGGATTTCATTAACTGTGTTATCT
GGCGCCAACCTGCTGAAAATTTAGCAAATTGGGCAAAAAAGGGTGCTTTAATCGGAATTACTGGTCGTATTCAGACTCGT
AATTATGAAAATCAACAGGGACAACGTGTTTACGTAACGGAAGTGGTTGCGGATAATTTCCAGATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGCTCATCTAATTCTTATAATAGTGGTGGTTTTAATAACACCTCAACTAATAATAATTATTCAGCTT
CTTCTCAACAAACACCTAACTTTGGTCGAGACGAAAGTCCATTTGGTAATTCAAACCCAATGGAAATTTCAGACGACGAT
CTACCATTTTAA
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAAGATGCAGAGCTCCGTTATACACCAAACCAGGTAGCAGTTGC
TACTTTTACCCTTGCTGTAAATCGCACTTTTAAGAGCCAAAATGGGGAGCGTGAAGCGGATTTCATTAACTGTGTTATCT
GGCGCCAACCTGCTGAAAATTTAGCAAATTGGGCAAAAAAGGGTGCTTTAATCGGAATTACTGGTCGTATTCAGACTCGT
AATTATGAAAATCAACAGGGACAACGTGTTTACGTAACGGAAGTGGTTGCGGATAATTTCCAGATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGCTCATCTAATTCTTATAATAGTGGTGGTTTTAATAACACCTCAACTAATAATAATTATTCAGCTT
CTTCTCAACAAACACCTAACTTTGGTCGAGACGAAAGTCCATTTGGTAATTCAAACCCAATGGAAATTTCAGACGACGAT
CTACCATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
58.382 |
100 |
0.62 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
58.721 |
100 |
0.62 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
56.604 |
65.031 |
0.368 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
54.128 |
66.871 |
0.362 |