Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   FGK95_RS02080 Genome accession   NZ_LR590625
Coordinates   387610..388296 (+) Length   228 a.a.
NCBI ID   WP_003046762.1    Uniprot ID   -
Organism   Streptococcus canis strain B700072     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 382610..393296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK95_RS02055 (SAMEA5186854_00408) ktrB 382716..384092 (-) 1377 WP_003046748.1 potassium uptake transporter channel subunit KtrB -
  FGK95_RS02060 (SAMEA5186854_00409) rsmG 384173..384886 (-) 714 WP_093998466.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  FGK95_RS02065 (SAMEA5186854_00410) - 385036..385593 (+) 558 WP_093998465.1 LemA family protein -
  FGK95_RS02070 (SAMEA5186854_00411) htpX 385641..386543 (+) 903 WP_099982901.1 zinc metalloprotease HtpX -
  FGK95_RS02075 (SAMEA5186854_00412) - 386816..387349 (+) 534 WP_164403426.1 YceD family protein -
  FGK95_RS02080 (SAMEA5186854_00413) covR 387610..388296 (+) 687 WP_003046762.1 two-component system response regulator CovR Regulator
  FGK95_RS02085 (SAMEA5186854_00414) - 388302..389804 (+) 1503 WP_003046765.1 HAMP domain-containing histidine kinase -
  FGK95_RS02090 (SAMEA5186854_00415) nrdR 390023..390517 (+) 495 WP_003046767.1 transcriptional regulator NrdR -
  FGK95_RS02095 (SAMEA5186854_00416) - 390501..391670 (+) 1170 WP_093998462.1 DnaD domain protein -
  FGK95_RS02100 (SAMEA5186854_00417) dnaI 391671..392573 (+) 903 WP_093998461.1 primosomal protein DnaI -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 26575.63 Da        Isoelectric Point: 4.6541

>NTDB_id=1127098 FGK95_RS02080 WP_003046762.1 387610..388296(+) (covR) [Streptococcus canis strain B700072]
MTKKILIIEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLMLPEMDGFEVTRRLQTEKTTYIMMMT
ARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDIESEKKLPSQGIYRDLVLNPQNRSVNRGDDEIPLTKREY
DLLSILMTNMNRVMTREELLSNVWKYDEAVETNVVDVYIRYLRGKVDIPGKESYIQTVRGMGYVIREK

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1127098 FGK95_RS02080 WP_003046762.1 387610..388296(+) (covR) [Streptococcus canis strain B700072]
ATGACAAAGAAAATTTTAATTATCGAAGATGAAAAAAATCTCGCAAGGTTTGTTTCACTTGAACTGCAACATGAAGGTTA
TGAAGTAACCGTTGAAGTAAATGGTCGTGAAGGGTTAGAAACTGCCTTGGAAAAGGATTTTGATTTAATCTTGCTTGACT
TAATGCTTCCTGAAATGGATGGTTTTGAAGTGACCCGTCGCTTACAGACTGAAAAAACAACATATATCATGATGATGACT
GCACGTGATTCGATTATGGATGTGGTGGCAGGCTTGGACCGTGGTGCGGATGACTATATTGTTAAGCCATTTGCGATTGA
AGAATTGTTGGCTCGTATTCGTGCAATTTTCCGTCGTCAAGATATTGAATCTGAAAAGAAACTGCCTAGTCAAGGAATTT
ATCGTGACTTGGTCTTGAACCCACAAAACCGTTCGGTTAATCGTGGGGATGATGAAATTCCCCTCACTAAACGTGAATAC
GACTTGCTTAGCATTTTGATGACAAACATGAACCGTGTGATGACACGTGAAGAATTGCTCTCAAATGTTTGGAAATATGA
TGAGGCAGTTGAAACAAACGTTGTTGATGTTTATATTCGTTACCTTCGTGGTAAAGTTGACATCCCAGGTAAGGAATCTT
ATATCCAAACCGTTCGCGGCATGGGATATGTTATTCGTGAGAAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

82.096

100

0.825
  covR Lactococcus lactis subsp. lactis strain DGCC12653

66.96

99.561

0.667
  vicR Streptococcus mutans UA159

43.103

100

0.439
  micA Streptococcus pneumoniae Cp1015

41.739

100

0.421

Multiple sequence alignment