Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicK   Type   Regulator
Locus tag   LG36_RS02115 Genome accession   NZ_CP009472
Coordinates   420642..422084 (-) Length   480 a.a.
NCBI ID   WP_052053826.1    Uniprot ID   -
Organism   Lactococcus lactis strain AI06     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 415642..427084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG36_RS02090 (LG36_0390) nox 415676..417016 (+) 1341 WP_038599184.1 H2O-forming NADH oxidase -
  LG36_RS02095 (LG36_0391) - 417106..417495 (+) 390 WP_038599186.1 single-stranded DNA-binding protein -
  LG36_RS02100 (LG36_0392) groES 417615..417899 (+) 285 WP_038599188.1 co-chaperone GroES -
  LG36_RS02105 (LG36_0393) groL 417986..419614 (+) 1629 WP_003131585.1 chaperonin GroEL -
  LG36_RS02110 (LG36_0394) vicX 419659..420471 (-) 813 WP_038599190.1 MBL fold metallo-hydrolase Regulator
  LG36_RS02115 (LG36_0395) vicK 420642..422084 (-) 1443 WP_052053826.1 cell wall metabolism sensor histidine kinase WalK Regulator
  LG36_RS02120 (LG36_0396) yycF 422077..422778 (-) 702 WP_038599193.1 response regulator YycF -
  LG36_RS02125 (LG36_0397) tmk 422957..423592 (+) 636 WP_038599196.1 dTMP kinase -
  LG36_RS02130 (LG36_0398) - 423725..424585 (+) 861 WP_038599199.1 DNA polymerase III subunit delta' -
  LG36_RS02135 (LG36_0399) yaaT 424637..425419 (+) 783 WP_038599202.1 stage 0 sporulation family protein Regulator
  LG36_RS02140 (LG36_0400) yabA 425412..425738 (+) 327 WP_003131570.1 DNA replication initiation control protein YabA -
  LG36_RS02145 (LG36_0401) rsmI 425738..426613 (+) 876 WP_038599205.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  LG36_RS02150 (LG36_0402) - 426690..426881 (-) 192 WP_012897234.1 hypothetical protein -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 54650.10 Da        Isoelectric Point: 4.5625

>NTDB_id=112708 LG36_RS02115 WP_052053826.1 420642..422084(-) (vicK) [Lactococcus lactis strain AI06]
MIKFFNSMIFKGVVAHLLLFVILFMSSFDYNFAHLSTFIGYYLFSLVFVLVFLNQQHRMIVNVSKQMNDIKNGYLNRDKL
PKGTSEINELYDEILKLGEDIVRTQNNLENQRNQLDSILAYMVDGVIATDRRGNIIMANKSALHYLNTDNDLLMEKNIVE
VLKIEDQYNFYDLLEKEPEVTIETHDTGNEAISLHIKFALFRRESGFISGIIAVLHDMTEQDKAERERRLFVSNVSHELR
TPLTSVKAYLEALEDGAIEDKETASSFINVSLTETNRMIRMISDLLTLSRMDQDRIVLNKEMINLIAFLDYQINRLDQIL
ETESNDLISSNFTLIRKYSEQPIWVEIDTDKIAQVIDNIIGNAIKYSPKGGTITISVEKRESDVLISISDQGMGIPKSDL
LKIFDRFYRVDNASRNSKVGGTGLGLSIVHDIVKIHGGTIFASSDGEGKGTTFSFTLPYSLEAADDWDDGTDEFEFEGNE

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=112708 LG36_RS02115 WP_052053826.1 420642..422084(-) (vicK) [Lactococcus lactis strain AI06]
ATGATTAAATTTTTTAATTCAATGATTTTTAAAGGAGTAGTTGCCCACCTACTTCTTTTTGTCATCCTTTTTATGAGCAG
TTTTGATTACAATTTTGCTCATTTAAGTACTTTTATCGGTTACTACCTATTTTCACTCGTCTTTGTTTTAGTCTTTCTTA
ATCAGCAGCATCGCATGATTGTGAATGTTTCTAAACAGATGAATGACATAAAAAATGGCTATTTAAATCGTGATAAACTC
CCAAAAGGGACAAGTGAAATCAATGAATTATACGACGAAATTTTAAAACTTGGTGAAGATATTGTTCGCACTCAGAACAA
TCTTGAAAATCAGAGAAATCAATTAGACAGCATCCTCGCCTATATGGTTGATGGCGTCATTGCCACCGACCGTCGCGGGA
ATATTATTATGGCCAATAAATCAGCTTTGCATTATTTGAATACAGATAATGATCTCTTGATGGAAAAAAATATTGTTGAG
GTCTTAAAAATTGAAGACCAGTATAATTTCTATGATTTATTGGAAAAAGAGCCAGAGGTAACTATTGAAACACATGATAC
TGGAAATGAAGCCATTTCACTTCACATAAAATTTGCTCTTTTTCGTCGTGAGTCTGGTTTTATTTCAGGAATTATTGCTG
TTTTACATGATATGACTGAACAAGATAAAGCAGAACGTGAACGACGCCTATTTGTTTCTAATGTTTCACACGAACTCCGA
ACTCCGCTCACCTCAGTAAAAGCCTACTTGGAAGCACTAGAAGACGGAGCCATTGAGGATAAAGAAACAGCTTCATCCTT
TATTAATGTTTCACTTACTGAAACTAATCGGATGATTCGAATGATTTCCGACCTTTTGACTTTATCAAGAATGGATCAAG
ACCGAATCGTTCTTAATAAAGAAATGATTAATTTAATTGCCTTCTTAGACTATCAAATTAACCGTTTAGACCAAATTTTA
GAAACCGAATCAAACGATTTAATCTCTTCTAATTTCACTCTCATCAGAAAATACTCTGAACAGCCCATCTGGGTCGAAAT
TGATACCGATAAAATTGCTCAAGTCATTGACAATATCATCGGAAACGCAATTAAGTATTCCCCTAAAGGTGGAACGATTA
CAATTTCCGTTGAAAAACGTGAAAGTGACGTTCTAATCTCCATCAGTGACCAAGGAATGGGAATTCCAAAATCTGATTTA
CTTAAGATTTTTGACCGTTTCTACCGAGTTGATAACGCTTCAAGAAATTCAAAAGTTGGGGGAACAGGTTTAGGCCTCTC
TATTGTCCATGATATTGTTAAAATACATGGCGGAACAATTTTTGCAAGCTCTGATGGAGAAGGAAAAGGAACAACCTTTA
GTTTCACTCTTCCATATTCTTTAGAAGCCGCAGATGACTGGGATGATGGCACTGATGAGTTTGAATTTGAGGGTAATGAA
TAA

Domains

Predicted by InterProScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(228-293)

PAS domain (PAS_9)

(124-220)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(348-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicK Streptococcus mutans UA159

51.559

86.875

0.448
  micB Streptococcus pneumoniae Cp1015

47.523

92.5

0.44

Multiple sequence alignment