Detailed information    

insolico Bioinformatically predicted

Overview

Name   yaaT   Type   Regulator
Locus tag   LG36_RS02135 Genome accession   NZ_CP009472
Coordinates   424637..425419 (+) Length   260 a.a.
NCBI ID   WP_038599202.1    Uniprot ID   -
Organism   Lactococcus lactis strain AI06     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 419637..430419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG36_RS02110 (LG36_0394) vicX 419659..420471 (-) 813 WP_038599190.1 MBL fold metallo-hydrolase Regulator
  LG36_RS02115 (LG36_0395) vicK 420642..422084 (-) 1443 WP_052053826.1 cell wall metabolism sensor histidine kinase WalK Regulator
  LG36_RS02120 (LG36_0396) yycF 422077..422778 (-) 702 WP_038599193.1 response regulator YycF -
  LG36_RS02125 (LG36_0397) tmk 422957..423592 (+) 636 WP_038599196.1 dTMP kinase -
  LG36_RS02130 (LG36_0398) - 423725..424585 (+) 861 WP_038599199.1 DNA polymerase III subunit delta' -
  LG36_RS02135 (LG36_0399) yaaT 424637..425419 (+) 783 WP_038599202.1 stage 0 sporulation family protein Regulator
  LG36_RS02140 (LG36_0400) yabA 425412..425738 (+) 327 WP_003131570.1 DNA replication initiation control protein YabA -
  LG36_RS02145 (LG36_0401) rsmI 425738..426613 (+) 876 WP_038599205.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  LG36_RS02150 (LG36_0402) - 426690..426881 (-) 192 WP_012897234.1 hypothetical protein -
  LG36_RS02155 (LG36_0403) mvk 426944..427876 (-) 933 WP_038599208.1 mevalonate kinase -
  LG36_RS02160 (LG36_0404) mvaD 428181..429137 (+) 957 WP_038599211.1 diphosphomevalonate decarboxylase -
  LG36_RS02165 (LG36_0405) - 429124..430113 (+) 990 WP_038599214.1 mevalonate kinase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 29802.33 Da        Isoelectric Point: 6.6374

>NTDB_id=112710 LG36_RS02135 WP_038599202.1 424637..425419(+) (yaaT) [Lactococcus lactis strain AI06]
MIYEIKFAHGESNVFAISDIELAPQTEVILRSDKGNFYGKIVREISEEANLEIHHTIVRKVNEDDLQVIAKLEERSKQAK
DKVRQLVIEQGLEMKIIDVAYNFDQMQLFISFTAENRVDFRLLLRELATTFRIRIELRQIGPRDAAKIHGGLGPCGRPLC
CSEFVYEFPNVSIKMAKNQNLSLKQNKLNGLCGRLMCCLTYEDSFYKEAQQLFPDFGEFVTTSEGKGKVVGLNVLKNRVK
IRFGEYSKDFELAEIEVNHG

Nucleotide


Download         Length: 783 bp        

>NTDB_id=112710 LG36_RS02135 WP_038599202.1 424637..425419(+) (yaaT) [Lactococcus lactis strain AI06]
ATGATTTATGAAATAAAATTTGCACATGGCGAATCAAATGTATTTGCAATAAGTGATATAGAACTTGCTCCACAAACAGA
AGTTATCCTTCGTTCAGATAAGGGAAACTTTTACGGAAAAATTGTACGTGAAATTTCTGAAGAAGCGAATCTTGAAATTC
ACCACACGATTGTGCGTAAAGTAAATGAGGATGATCTCCAAGTTATTGCAAAACTTGAGGAACGTTCTAAACAAGCCAAA
GATAAAGTTCGCCAACTTGTCATCGAACAAGGTTTGGAAATGAAAATTATTGATGTTGCTTATAATTTTGACCAAATGCA
ACTTTTTATTTCGTTTACGGCAGAGAATCGTGTTGATTTTCGATTGCTTTTGCGTGAGTTGGCAACAACTTTCAGAATCA
GGATTGAACTTCGCCAAATTGGGCCAAGAGATGCGGCGAAAATTCATGGTGGACTTGGACCTTGTGGGCGTCCTTTGTGC
TGTTCTGAGTTTGTTTATGAATTTCCAAATGTTTCAATCAAAATGGCCAAAAATCAAAATCTATCTTTGAAACAAAATAA
ATTAAACGGTCTTTGTGGTCGTTTGATGTGCTGTTTAACTTATGAAGATAGTTTTTATAAAGAAGCCCAACAACTTTTCC
CAGATTTTGGTGAGTTTGTAACTACTTCAGAGGGAAAAGGAAAAGTTGTTGGCTTAAATGTTTTAAAAAATAGAGTAAAA
ATCCGCTTTGGAGAATATAGCAAGGATTTTGAACTTGCAGAAATTGAGGTGAATCATGGCTGA

Domains

Predicted by InterProScan.

PSP1 C-terminal conserved region (PSP1)

(56-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  yaaT Bacillus subtilis subsp. subtilis str. 168

46.119

84.231

0.388

Multiple sequence alignment