Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   LG36_RS02110 Genome accession   NZ_CP009472
Coordinates   419659..420471 (-) Length   270 a.a.
NCBI ID   WP_038599190.1    Uniprot ID   -
Organism   Lactococcus lactis strain AI06     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 414659..425471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG36_RS02085 (LG36_0389) ytpR 414887..415513 (+) 627 WP_038599182.1 YtpR family tRNA-binding protein -
  LG36_RS02090 (LG36_0390) nox 415676..417016 (+) 1341 WP_038599184.1 H2O-forming NADH oxidase -
  LG36_RS02095 (LG36_0391) - 417106..417495 (+) 390 WP_038599186.1 single-stranded DNA-binding protein -
  LG36_RS02100 (LG36_0392) groES 417615..417899 (+) 285 WP_038599188.1 co-chaperone GroES -
  LG36_RS02105 (LG36_0393) groL 417986..419614 (+) 1629 WP_003131585.1 chaperonin GroEL -
  LG36_RS02110 (LG36_0394) vicX 419659..420471 (-) 813 WP_038599190.1 MBL fold metallo-hydrolase Regulator
  LG36_RS02115 (LG36_0395) vicK 420642..422084 (-) 1443 WP_052053826.1 cell wall metabolism sensor histidine kinase WalK Regulator
  LG36_RS02120 (LG36_0396) yycF 422077..422778 (-) 702 WP_038599193.1 response regulator YycF -
  LG36_RS02125 (LG36_0397) tmk 422957..423592 (+) 636 WP_038599196.1 dTMP kinase -
  LG36_RS02130 (LG36_0398) - 423725..424585 (+) 861 WP_038599199.1 DNA polymerase III subunit delta' -
  LG36_RS02135 (LG36_0399) yaaT 424637..425419 (+) 783 WP_038599202.1 stage 0 sporulation family protein Regulator

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30508.35 Da        Isoelectric Point: 5.8494

>NTDB_id=112707 LG36_RS02110 WP_038599190.1 419659..420471(-) (vicX) [Lactococcus lactis strain AI06]
MTEQNGFKYSILASGSTGNSFYLETPKKKILVDAGLSGKKIESLLSEIDRDIHDIDALLITHEHSDHIKGIGVLARKYGI
DLYANEDTWSELDSKNALGKIPVEQKHLFEMGKTMTFGDIDVESFGVSHDAIAPQFYRFMKDNKSFVMLTDTGYVSDRMR
GTIENADAYLMESNHDIEILRMGAYPWRTKQRILSDQGHLSNEDGAEAAFSIHGNKTKRIFLGHLSLNNNIKELAHLTMD
GYLQQHDVDTKKDLKILDTSHEHASQLYDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=112707 LG36_RS02110 WP_038599190.1 419659..420471(-) (vicX) [Lactococcus lactis strain AI06]
ATGACTGAACAAAATGGCTTTAAATATTCCATTTTAGCCTCTGGTTCAACAGGAAATTCTTTTTACTTAGAAACTCCAAA
GAAAAAAATTCTTGTTGATGCCGGACTATCTGGAAAAAAAATAGAAAGTTTACTATCAGAAATTGACCGTGATATTCATG
ATATTGATGCTTTATTAATTACCCATGAACATAGTGACCATATCAAAGGGATTGGTGTTTTGGCAAGGAAATATGGTATT
GACCTTTACGCAAATGAAGATACTTGGTCTGAACTAGATAGTAAAAATGCTTTAGGAAAAATCCCTGTTGAACAAAAACA
TCTGTTTGAAATGGGAAAAACAATGACTTTTGGTGATATTGATGTTGAATCTTTTGGCGTGAGTCACGATGCCATCGCAC
CACAATTTTATCGTTTCATGAAAGATAACAAGAGTTTTGTTATGCTAACTGATACAGGTTATGTATCCGATAGAATGCGT
GGAACCATTGAAAATGCGGATGCTTATCTTATGGAATCAAACCATGACATTGAGATACTCCGCATGGGAGCCTATCCTTG
GCGGACAAAGCAACGTATCCTAAGTGACCAAGGCCACTTATCTAATGAGGACGGCGCTGAGGCGGCTTTTAGTATTCATG
GCAATAAGACAAAACGAATTTTTCTAGGGCACTTGAGTTTAAATAATAATATCAAAGAGCTTGCTCATCTTACTATGGAT
GGTTACTTACAACAACATGATGTCGATACTAAAAAGGACTTGAAGATCCTTGATACTAGTCACGAACATGCTAGTCAACT
TTACGATATTTAG

Domains

Predicted by InterProScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

68.148

100

0.681

Multiple sequence alignment