Detailed information NTG0112703

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PSYRMG_RS20005
• Genome accession: NZ_CP005970
• Coordinates: 4578720..4579592 (-)
• Length: 290 a.a.
• NCBI ID: WP_058397526.1
• Uniprot ID: -
• Organism: Pseudomonas syringae UMAF0158
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4573720..4584592

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSYRMG_RS19975 (PSYRMG_20320)	-	4574505..4575803 (-)	1299	WP_003430739.1	NAD(P)/FAD-dependent oxidoreductase	-
PSYRMG_RS28155	-	4575899..4576135 (-)	237	WP_316933231.1	DUF3094 family protein	-
PSYRMG_RS19980 (PSYRMG_20325)	-	4576020..4576553 (-)	534	WP_054082223.1	MOSC domain-containing protein	-
PSYRMG_RS19985 (PSYRMG_20330)	-	4576550..4577179 (-)	630	WP_003345130.1	DUF1780 domain-containing protein	-
PSYRMG_RS19990 (PSYRMG_20335)	-	4577307..4577768 (+)	462	WP_058397529.1	hypothetical protein	-
PSYRMG_RS19995 (PSYRMG_20340)	yacG	4577894..4578103 (-)	210	WP_002552020.1	DNA gyrase inhibitor YacG	-
PSYRMG_RS20000 (PSYRMG_20345)	coaE	4578100..4578723 (-)	624	WP_058397527.1	dephospho-CoA kinase	-
PSYRMG_RS20005 (PSYRMG_20350)	pilD	4578720..4579592 (-)	873	WP_058397526.1	A24 family peptidase	Machinery gene
PSYRMG_RS20010 (PSYRMG_20355)	pilC	4579594..4580811 (-)	1218	WP_058397525.1	type II secretion system F family protein	Machinery gene
PSYRMG_RS20015 (PSYRMG_20360)	pilB	4580814..4582508 (-)	1695	WP_058397524.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PSYRMG_RS26570	pilA2	4582734..4583159 (+)	426	WP_044323946.1	pilin	Machinery gene
PSYRMG_RS27930	-	4583300..4583471 (+)	172	Protein_3977	DUF433 domain-containing protein	-
PSYRMG_RS20025 (PSYRMG_20365)	-	4583519..4584064 (-)	546	WP_003371273.1	DUF1523 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32019.16 Da
• Isoelectric Point: 8.1512

>NTDB_id=112703 PSYRMG_RS20005 WP_058397526.1 4578720..4579592(-) (pilD) [Pseudomonas syringae UMAF0158]
MPLLDLLASSPLAFVITCCILGLIIGSFLNVVVYRLPIMMERDWKAQSRELLGLPAEPDQPVFNLNRPRSSCPHCAHKIR
PWENLPVISYLLLRGKCSQCKAPISQRYPLVELTCAVLSAYVAWHFGFGWQAAAILVLSWGLLAMSLIDADHQLLPDSLV
LPLLWLGLIVNSFGLFTSLNDALWGAVAGYLALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AVLGVIMMRVRRVESGTPIPFGPYLAIAGWIALLWGGQITDSYMQFAGFR

Nucleotide

• Length: 873 bp

>NTDB_id=112703 PSYRMG_RS20005 WP_058397526.1 4578720..4579592(-) (pilD) [Pseudomonas syringae UMAF0158]
ATGCCCCTCCTCGACCTCTTGGCCAGCTCACCGCTGGCCTTCGTCATTACCTGCTGCATCCTCGGCCTGATCATCGGAAG
CTTCCTCAACGTGGTCGTCTACCGCCTCCCGATAATGATGGAGCGCGACTGGAAAGCCCAATCCCGTGAACTGCTCGGCC
TGCCCGCAGAACCCGATCAACCCGTCTTCAATCTGAACCGCCCCCGCTCCAGCTGCCCGCATTGCGCACACAAAATCCGC
CCATGGGAAAACCTGCCGGTGATCAGCTATCTGCTGCTGCGCGGTAAATGTTCGCAGTGCAAAGCGCCGATCAGCCAACG
TTACCCGCTGGTCGAGCTGACCTGCGCAGTGTTGTCGGCCTACGTGGCCTGGCATTTCGGCTTCGGCTGGCAGGCAGCGG
CGATACTGGTGTTGAGCTGGGGCCTGCTGGCGATGAGTCTGATCGACGCCGACCACCAGCTGTTACCTGACTCTCTGGTG
CTGCCACTTCTGTGGCTGGGCCTCATCGTCAACTCTTTCGGGCTGTTCACCTCGCTGAACGATGCGCTTTGGGGCGCTGT
GGCCGGTTATCTGGCGCTGTGGTCGGTGTTTTGGCTGTTCAAGCTCGTGACCGGCAAGGAAGGCATGGGTTATGGCGACT
TCAAGTTGCTGGCGATGCTGGGCGCGTGGGGCGGCTGGCAGATTTTGCCGTTAACCATCCTGTTATCGTCGCTGGTGGGC
GCGGTGCTTGGGGTGATCATGATGCGTGTGCGCAGGGTCGAAAGCGGTACGCCTATCCCCTTTGGTCCTTATCTGGCCAT
TGCGGGGTGGATCGCTTTGCTCTGGGGTGGTCAAATAACCGACTCTTACATGCAGTTTGCCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.169	97.931	0.521
pilD	Vibrio campbellii strain DS40M4	52.297	97.586	0.51
pilD	Acinetobacter baumannii D1279779	52.92	94.483	0.5
pilD	Acinetobacter nosocomialis M2	52.19	94.483	0.493
pilD	Neisseria gonorrhoeae MS11	51.493	92.414	0.476