Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   PSYRMG_RS19665 Genome accession   NZ_CP005970
Coordinates   4507052..4508389 (-) Length   445 a.a.
NCBI ID   WP_044310107.1    Uniprot ID   A0A1H0LTG7
Organism   Pseudomonas syringae UMAF0158     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4502052..4513389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSYRMG_RS19650 (PSYRMG_19985) - 4502186..4505383 (+) 3198 WP_060708649.1 PilC/PilY family type IV pilus protein -
  PSYRMG_RS19655 (PSYRMG_19990) - 4505395..4505793 (+) 399 WP_003371127.1 type IV pilin protein -
  PSYRMG_RS19660 (PSYRMG_19995) thiO 4505819..4506922 (+) 1104 WP_003371129.1 glycine oxidase ThiO -
  PSYRMG_RS19665 (PSYRMG_20000) pilR 4507052..4508389 (-) 1338 WP_044310107.1 sigma-54 dependent transcriptional regulator Regulator
  PSYRMG_RS19670 (PSYRMG_20005) pilS 4508392..4509984 (-) 1593 WP_060708650.1 ATP-binding protein Regulator
  PSYRMG_RS19675 (PSYRMG_20010) - 4509974..4510213 (-) 240 WP_032609810.1 PP0621 family protein -
  PSYRMG_RS19680 (PSYRMG_20015) - 4510334..4511356 (-) 1023 WP_003371138.1 outer membrane protein assembly factor BamD -
  PSYRMG_RS19685 (PSYRMG_20020) rluD 4511506..4512468 (+) 963 WP_002551999.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PSYRMG_RS19690 (PSYRMG_20025) pgeF 4512465..4513193 (+) 729 WP_060708651.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49721.72 Da        Isoelectric Point: 6.2986

>NTDB_id=112701 PSYRMG_RS19665 WP_044310107.1 4507052..4508389(-) (pilR) [Pseudomonas syringae UMAF0158]
MTQRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPHVPVA
MITAHGNLDTAINALKAGAFDFVTKPVDLGRLRELVNSALSLPGAPPTRSIDNRLLGDSLAMRTLRNQIGKLARSQAPIY
ISGESGSGKELVARLIHEQGPRIDKPFIPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHTGTLFLDEVADLP
LAMQVKLLRAIQEKSIRSVGGQQEQIVDVRILCATHKNLNAEVAAGRFRQDLYYRLNVIEVRVPPLRERREDIDQLAASV
LKRLAGNGAQPVARLNAQALETLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLTESASPQESDGPSLADIDNLED
YLESIERQLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=112701 PSYRMG_RS19665 WP_044310107.1 4507052..4508389(-) (pilR) [Pseudomonas syringae UMAF0158]
ATGACCCAACGGCAAAAAATCCTGATAGTCGATGATGAGCCGGATATTCGCGAACTCCTGGAGATCACGCTGGGGCGCAT
GAAACTCGACACCCGCAGTGCCCGTAACGTCGCCGAAGCGCACGACTGGCTGGCCCGCGAACCGTTCGACATGTGCCTGA
CCGACATGCGTTTGCCTGACGGTAATGGCCTTGAGCTGGTGCAACACATACAGCACGGCTACCCCCACGTGCCGGTGGCG
ATGATCACTGCCCACGGCAATCTGGACACGGCGATCAACGCGCTGAAGGCCGGGGCTTTCGACTTTGTGACCAAGCCGGT
CGACCTCGGCAGGTTGCGCGAGCTGGTCAATAGCGCGCTGAGCCTGCCCGGCGCACCACCGACGCGAAGCATCGACAACC
GCCTGCTGGGCGACTCGCTGGCAATGCGTACCTTGCGCAATCAGATCGGCAAGCTGGCCCGCAGCCAGGCGCCGATCTAC
ATCAGCGGCGAGTCGGGCAGCGGCAAGGAGCTTGTAGCGCGTCTGATCCACGAGCAGGGTCCGCGCATCGACAAACCTTT
CATACCGGTGAACTGCGGCGCCATTCCTTCCGAGCTGATGGAAAGCGAATTCTTCGGTCATCGCAAAGGCAGCTTCAGCG
GTGCCCACGAAGACAAGCCCGGTCTGTTTCAGGCGGCGCACACCGGCACGCTGTTTCTCGATGAGGTCGCCGACCTGCCG
CTGGCCATGCAGGTCAAACTGCTGCGCGCCATTCAGGAAAAATCCATCCGCAGCGTCGGCGGCCAGCAAGAGCAGATTGT
CGACGTACGTATTCTGTGTGCCACCCACAAGAACCTGAATGCAGAGGTCGCGGCCGGTCGGTTTCGTCAGGATCTTTATT
ACCGATTGAACGTGATCGAAGTGCGCGTGCCCCCATTGCGCGAGCGCCGTGAGGATATCGACCAACTGGCAGCCAGCGTG
CTCAAGCGCCTTGCCGGGAACGGCGCACAACCCGTCGCACGCCTGAACGCGCAGGCGCTGGAAACGCTGAAGAGCTACCG
CTTCCCCGGTAACGTGCGCGAACTGGAAAACATGCTGGAGCGCGCCTACACGCTGTGCGAGAACGATGAAATCCACGCCA
GCGACCTGCGCCTGACAGAGTCCGCCAGCCCTCAGGAGAGCGACGGCCCGAGCCTGGCCGACATCGACAACCTTGAAGAC
TACCTGGAAAGCATCGAACGCCAGCTCATCCTGCAGGCACTGGAAGAAACACGCTGGAATCGCACTGCGGCGGCAGAAAG
GCTCAGTTTGTCGTTCAGGTCACTGCGCTATCGCCTGAAGAAGCTGGGCCTGGATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Response regulator receiver domain (Response_reg)

(7-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H0LTG7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

77.878

99.551

0.775
  pilR Acinetobacter baumannii strain A118

49.036

100

0.515
  luxO Vibrio cholerae strain A1552

37.838

99.775

0.378

Multiple sequence alignment