Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   FGL10_RS01815 Genome accession   NZ_LR590477
Coordinates   316387..316860 (+) Length   157 a.a.
NCBI ID   WP_025457170.1    Uniprot ID   -
Organism   Neisseria lactamica strain NCTC10617     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 311387..321860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL10_RS01790 (NCTC10617_00311) dnaB 312009..313421 (+) 1413 WP_003707443.1 replicative DNA helicase -
  FGL10_RS01795 (NCTC10617_00312) pilH 313566..314231 (+) 666 WP_003707444.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  FGL10_RS01800 (NCTC10617_00313) pilI 314261..314872 (+) 612 WP_036469211.1 type IV pilus modification protein PilV Machinery gene
  FGL10_RS01805 (NCTC10617_00314) pilJ 314869..315810 (+) 942 WP_003707448.1 PilW family protein Machinery gene
  FGL10_RS01810 (NCTC10617_00315) pilK 315789..316385 (+) 597 WP_003707450.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  FGL10_RS01815 (NCTC10617_00316) pilL 316387..316860 (+) 474 WP_025457170.1 PilX family type IV pilin Machinery gene
  FGL10_RS01820 (NCTC10617_00317) - 316930..317238 (-) 309 WP_003707454.1 AzlD family protein -
  FGL10_RS01825 (NCTC10617_00318) - 317235..317945 (-) 711 WP_036469214.1 AzlC family ABC transporter permease -
  FGL10_RS01830 (NCTC10617_00319) dut 318087..318539 (+) 453 WP_003707457.1 dUTP diphosphatase -
  FGL10_RS01835 (NCTC10617_00320) dapC 318617..319804 (+) 1188 WP_003707459.1 succinyldiaminopimelate transaminase -
  FGL10_RS01840 (NCTC10617_00321) yaaA 320068..320847 (+) 780 WP_003707461.1 peroxide stress protein YaaA -
  FGL10_RS11925 - 321328..321495 (-) 168 WP_003707463.1 hypothetical protein -
  FGL10_RS01860 (NCTC10617_00325) - 321515..321817 (-) 303 WP_003707465.1 hypothetical protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17286.82 Da        Isoelectric Point: 9.1760

>NTDB_id=1126923 FGL10_RS01815 WP_025457170.1 316387..316860(+) (pilL) [Neisseria lactamica strain NCTC10617]
MEQKGFTLVEVMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVSINNAFKQIILKNPGESNQNLETELKKFAPAYRM
NPKIAEKYSVSGEFVDAAKSRAYRLVGVPKAGTGYTLSVWMNSVGDGYKCRDAASARAYSETLSADAGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=1126923 FGL10_RS01815 WP_025457170.1 316387..316860(+) (pilL) [Neisseria lactamica strain NCTC10617]
ATGGAGCAAAAAGGGTTTACATTGGTTGAGGTAATGATAGTCGTCGCGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCAGTATCAACAATGCTTTCAAAC
AGATTATTTTGAAAAATCCTGGGGAAAGTAATCAAAACCTTGAAACGGAACTGAAGAAGTTTGCGCCGGCTTATCGGATG
AACCCGAAAATTGCTGAAAAATATAGTGTTTCGGGGGAATTTGTCGATGCGGCAAAATCAAGGGCATACAGGTTGGTCGG
CGTTCCGAAGGCGGGGACGGGTTATACCTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCG
CTTCTGCCCGAGCCTATTCGGAGACTTTGTCCGCGGATGCCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

79.618

100

0.796
  pilX Neisseria meningitidis 8013

78.981

100

0.79

Multiple sequence alignment