Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   FGL10_RS01810 Genome accession   NZ_LR590477
Coordinates   315789..316385 (+) Length   198 a.a.
NCBI ID   WP_003707450.1    Uniprot ID   A0A1V0DU72
Organism   Neisseria lactamica strain NCTC10617     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 310789..321385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL10_RS01775 (NCTC10617_00309) - 310865..311197 (+) 333 WP_003707437.1 hypothetical protein -
  FGL10_RS01780 (NCTC10617_00310) - 311262..311843 (-) 582 WP_003707439.1 superoxide dismutase -
  FGL10_RS01790 (NCTC10617_00311) dnaB 312009..313421 (+) 1413 WP_003707443.1 replicative DNA helicase -
  FGL10_RS01795 (NCTC10617_00312) pilH 313566..314231 (+) 666 WP_003707444.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  FGL10_RS01800 (NCTC10617_00313) pilI 314261..314872 (+) 612 WP_036469211.1 type IV pilus modification protein PilV Machinery gene
  FGL10_RS01805 (NCTC10617_00314) pilJ 314869..315810 (+) 942 WP_003707448.1 PilW family protein Machinery gene
  FGL10_RS01810 (NCTC10617_00315) pilK 315789..316385 (+) 597 WP_003707450.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  FGL10_RS01815 (NCTC10617_00316) pilL 316387..316860 (+) 474 WP_025457170.1 PilX family type IV pilin Machinery gene
  FGL10_RS01820 (NCTC10617_00317) - 316930..317238 (-) 309 WP_003707454.1 AzlD family protein -
  FGL10_RS01825 (NCTC10617_00318) - 317235..317945 (-) 711 WP_036469214.1 AzlC family ABC transporter permease -
  FGL10_RS01830 (NCTC10617_00319) dut 318087..318539 (+) 453 WP_003707457.1 dUTP diphosphatase -
  FGL10_RS01835 (NCTC10617_00320) dapC 318617..319804 (+) 1188 WP_003707459.1 succinyldiaminopimelate transaminase -
  FGL10_RS01840 (NCTC10617_00321) yaaA 320068..320847 (+) 780 WP_003707461.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21808.69 Da        Isoelectric Point: 5.3292

>NTDB_id=1126922 FGL10_RS01810 WP_003707450.1 315789..316385(+) (pilK) [Neisseria lactamica strain NCTC10617]
MRKQNTLTGIPTSDGQKGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALRDGEFQVLDLEYTT
DSKVTFSENCENGLCTAVNVRTNNDNEEAFDNIVVQGKPTVEAVKRFCPANSTNLCIDNKGMVYGKGTGSVSKMPRYIIE
YLGVKNNQNIYRVTAKAWGKNANTVVVLQSYVSNNDEQ

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1126922 FGL10_RS01810 WP_003707450.1 315789..316385(+) (pilK) [Neisseria lactamica strain NCTC10617]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAAAGGGTTTGCACTGTTTATCGTGCTGATGGT
GATGATCGTCGTGGCCTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGACGGCGAATTTCAGGTTTTGGATTTGGAATATACTACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGAAAACGGCCTGTGTACCGCAGTGAATGTGCGGACAAATAATGATAATGA
AGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCTACCGTTGAAGCCGTGAAGCGTTTTTGCCCTGCAAATTCTACCA
ACCTGTGTATTGACAATAAAGGGATGGTATATGGGAAAGGTACGGGAAGCGTCAGCAAAATGCCGCGTTATATTATCGAA
TATTTGGGTGTGAAGAATAACCAAAATATTTATAGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGTCGT
CCTACAATCTTATGTAAGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-192)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V0DU72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

88.67

100

0.909

Multiple sequence alignment