Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   FGL10_RS01795 Genome accession   NZ_LR590477
Coordinates   313566..314231 (+) Length   221 a.a.
NCBI ID   WP_003707444.1    Uniprot ID   A0A1V0DWR6
Organism   Neisseria lactamica strain NCTC10617     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 308566..319231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL10_RS01765 (NCTC10617_00307) cysW 308596..309456 (-) 861 WP_003707429.1 sulfate ABC transporter permease subunit CysW -
  FGL10_RS01770 (NCTC10617_00308) cysT 309843..310679 (-) 837 WP_003707433.1 sulfate ABC transporter permease subunit CysT -
  FGL10_RS01775 (NCTC10617_00309) - 310865..311197 (+) 333 WP_003707437.1 hypothetical protein -
  FGL10_RS01780 (NCTC10617_00310) - 311262..311843 (-) 582 WP_003707439.1 superoxide dismutase -
  FGL10_RS01790 (NCTC10617_00311) dnaB 312009..313421 (+) 1413 WP_003707443.1 replicative DNA helicase -
  FGL10_RS01795 (NCTC10617_00312) pilH 313566..314231 (+) 666 WP_003707444.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  FGL10_RS01800 (NCTC10617_00313) pilI 314261..314872 (+) 612 WP_036469211.1 type IV pilus modification protein PilV Machinery gene
  FGL10_RS01805 (NCTC10617_00314) pilJ 314869..315810 (+) 942 WP_003707448.1 PilW family protein Machinery gene
  FGL10_RS01810 (NCTC10617_00315) pilK 315789..316385 (+) 597 WP_003707450.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  FGL10_RS01815 (NCTC10617_00316) pilL 316387..316860 (+) 474 WP_025457170.1 PilX family type IV pilin Machinery gene
  FGL10_RS01820 (NCTC10617_00317) - 316930..317238 (-) 309 WP_003707454.1 AzlD family protein -
  FGL10_RS01825 (NCTC10617_00318) - 317235..317945 (-) 711 WP_036469214.1 AzlC family ABC transporter permease -
  FGL10_RS01830 (NCTC10617_00319) dut 318087..318539 (+) 453 WP_003707457.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24492.93 Da        Isoelectric Point: 8.8970

>NTDB_id=1126919 FGL10_RS01795 WP_003707444.1 313566..314231(+) (pilH) [Neisseria lactamica strain NCTC10617]
MCTRKQQGFTLIELLIVMVIAAIMAMIALPSMSRWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPVQVKKDGTVN
NQCDFSKKGQGMLAFGDKNGNKAYDGDAADVFLRSVVLNDADDSRINYAFNHIAFGQTQPTADRVVWTFNQNGAFGYSSD
QNLTRTSRFVYSDGYIQIVLTDAKAVSADEKKFRSAVVLIDGSGRVEVCPRNDTRAVCQHQ

Nucleotide


Download         Length: 666 bp        

>NTDB_id=1126919 FGL10_RS01795 WP_003707444.1 313566..314231(+) (pilH) [Neisseria lactamica strain NCTC10617]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAATAGAGCTGCTCATCGTGATGGTCATCGCAGCCATTATGGCGATGAT
AGCCCTCCCCAGTATGAGCCGGTGGATTGCATCCCGCCGTATCGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTACGGTCAAC
AACCAATGCGACTTCAGTAAGAAGGGGCAGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGCATATGACGGCGA
TGCTGCGGATGTTTTTCTCCGCAGCGTGGTGTTGAATGATGCCGACGACAGCCGGATTAATTATGCCTTCAACCATATCG
CTTTCGGTCAGACACAGCCGACTGCCGACCGTGTTGTTTGGACTTTCAACCAAAACGGGGCATTCGGCTATTCGTCCGAT
CAGAATCTCACGCGCACTTCCAGATTTGTTTACTCTGACGGTTATATCCAAATCGTGTTGACAGATGCGAAGGCGGTTTC
TGCCGATGAAAAGAAATTCCGTTCGGCAGTGGTTTTGATTGACGGCAGCGGCAGGGTTGAGGTTTGTCCTAGAAACGATA
CGCGCGCCGTATGCCAACATCAATGA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(44-178)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V0DWR6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

85.909

99.548

0.855

Multiple sequence alignment