Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | PSYRB_RS22875 | Genome accession | NZ_CP005969 |
| Coordinates | 5342910..5343461 (-) | Length | 183 a.a. |
| NCBI ID | WP_024659933.1 | Uniprot ID | A0AAJ4B3Z4 |
| Organism | Pseudomonas syringae pv. syringae B301D | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 5337910..5348461
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PSYRB_RS22850 (PsyrB_23350) | - | 5338162..5339055 (+) | 894 | WP_032654178.1 | ABC transporter permease subunit | - |
| PSYRB_RS22855 (PsyrB_23355) | - | 5339052..5340158 (+) | 1107 | WP_003400409.1 | ABC transporter ATP-binding protein | - |
| PSYRB_RS22860 (PsyrB_23360) | - | 5340165..5340926 (+) | 762 | WP_003400412.1 | glycerophosphoryl diester phosphodiesterase | - |
| PSYRB_RS22865 (PsyrB_23365) | - | 5340923..5341666 (+) | 744 | WP_003400414.1 | inositol monophosphatase family protein | - |
| PSYRB_RS22870 (PsyrB_23370) | - | 5341666..5342778 (+) | 1113 | WP_032654181.1 | endo-1,4-beta-xylanase | - |
| PSYRB_RS22875 (PsyrB_23375) | ssb | 5342910..5343461 (-) | 552 | WP_024659933.1 | single-stranded DNA-binding protein | Machinery gene |
| PSYRB_RS22880 (PsyrB_23380) | - | 5343471..5344865 (-) | 1395 | WP_003400420.1 | MFS transporter | - |
| PSYRB_RS22885 (PsyrB_23385) | uvrA | 5344995..5347829 (+) | 2835 | WP_032654184.1 | excinuclease ABC subunit UvrA | - |
| PSYRB_RS22890 (PsyrB_23390) | bfr | 5347924..5348388 (-) | 465 | WP_003317095.1 | bacterioferritin | - |
Sequence
Protein
Download Length: 183 a.a. Molecular weight: 20364.47 Da Isoelectric Point: 5.9539
>NTDB_id=112681 PSYRB_RS22875 WP_024659933.1 5342910..5343461(-) (ssb) [Pseudomonas syringae pv. syringae B301D]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGEKKEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDAQQGQGGGGNYNQSAPRPQQSRPQQSAPQQNYNQQPPQRDSR
PAPQQQAPQPAADFDSFDDDIPF
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGEKKEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDAQQGQGGGGNYNQSAPRPQQSRPQQSAPQQNYNQQPPQRDSR
PAPQQQAPQPAADFDSFDDDIPF
Nucleotide
Download Length: 552 bp
>NTDB_id=112681 PSYRB_RS22875 WP_024659933.1 5342910..5343461(-) (ssb) [Pseudomonas syringae pv. syringae B301D]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAATGGACTGACAAGCAGAGCGGCGAGAAAAAAGAAAAAACCGAAT
GGCACCGTGTTTCGATGTTCGGCAAGGTCGCGGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCGTCGTCGACATGCAGGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGTGACGCTCAACAAGGTCAAGGCGGTGGTGGCAACTACAACCAGTCCGCGC
CTCGTCCACAGCAGTCGCGCCCACAACAGTCGGCACCGCAGCAGAACTACAACCAGCAGCCGCCACAACGCGACTCGCGT
CCAGCGCCGCAACAACAAGCGCCGCAGCCAGCTGCTGACTTTGATAGCTTTGATGATGATATTCCGTTCTAG
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAATGGACTGACAAGCAGAGCGGCGAGAAAAAAGAAAAAACCGAAT
GGCACCGTGTTTCGATGTTCGGCAAGGTCGCGGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCGTCGTCGACATGCAGGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGTGACGCTCAACAAGGTCAAGGCGGTGGTGGCAACTACAACCAGTCCGCGC
CTCGTCCACAGCAGTCGCGCCCACAACAGTCGGCACCGCAGCAGAACTACAACCAGCAGCCGCCACAACGCGACTCGCGT
CCAGCGCCGCAACAACAAGCGCCGCAGCCAGCTGCTGACTTTGATAGCTTTGATGATGATATTCCGTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
56.757 |
100 |
0.574 |
| ssb | Glaesserella parasuis strain SC1401 |
47.895 |
100 |
0.497 |
| ssb | Neisseria gonorrhoeae MS11 |
44.865 |
100 |
0.454 |
| ssb | Neisseria meningitidis MC58 |
43.956 |
99.454 |
0.437 |