Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | FGK83_RS03430 | Genome accession | NZ_LR590465 |
| Coordinates | 688468..688989 (+) | Length | 173 a.a. |
| NCBI ID | WP_138171637.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain NCTC8468 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 683468..693989
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FGK83_RS03425 (NCTC8468_00677) | uvrA | 685484..688315 (-) | 2832 | WP_138171635.1 | excinuclease ABC subunit UvrA | - |
| FGK83_RS03430 (NCTC8468_00678) | ssb | 688468..688989 (+) | 522 | WP_138171637.1 | single-stranded DNA-binding protein | Machinery gene |
| FGK83_RS03435 (NCTC8468_00679) | - | 689174..689983 (-) | 810 | WP_138171638.1 | energy transducer TonB | - |
| FGK83_RS03440 (NCTC8468_00680) | exbD | 689993..690436 (-) | 444 | WP_005656183.1 | TonB system transport protein ExbD | - |
| FGK83_RS03445 (NCTC8468_00681) | exbB | 690440..690892 (-) | 453 | WP_005656185.1 | TonB-system energizer ExbB | - |
| FGK83_RS03450 (NCTC8468_00682) | bcp | 691036..691503 (-) | 468 | WP_105873098.1 | thioredoxin-dependent thiol peroxidase | - |
| FGK83_RS03455 (NCTC8468_00683) | dapA | 691604..692500 (+) | 897 | WP_138171640.1 | 4-hydroxy-tetrahydrodipicolinate synthase | - |
| FGK83_RS03460 (NCTC8468_00684) | bamC | 692612..693259 (+) | 648 | WP_138171642.1 | outer membrane protein assembly factor BamC | - |
| FGK83_RS03465 (NCTC8468_00685) | hpf | 693432..693755 (+) | 324 | WP_138171644.1 | ribosome hibernation-promoting factor, HPF/YfiA family | - |
Sequence
Protein
Download Length: 173 a.a. Molecular weight: 19219.99 Da Isoelectric Point: 5.2649
>NTDB_id=1126747 FGK83_RS03430 WP_138171637.1 688468..688989(+) (ssb) [Haemophilus influenzae strain NCTC8468]
MAGINKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWNDRNTGERREVTEWHRIVFYRRQAEICGEYLRKGSQVYVEG
RLKTRKWQDQNSQDRYTTEIQGDVMQMLGGRNQNAGSYGNDMGGAPQSSYQARQTNNGGSYQSSRSAPQSATSQPATPQA
EPPMDGFDDDIPF
MAGINKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWNDRNTGERREVTEWHRIVFYRRQAEICGEYLRKGSQVYVEG
RLKTRKWQDQNSQDRYTTEIQGDVMQMLGGRNQNAGSYGNDMGGAPQSSYQARQTNNGGSYQSSRSAPQSATSQPATPQA
EPPMDGFDDDIPF
Nucleotide
Download Length: 522 bp
>NTDB_id=1126747 FGK83_RS03430 WP_138171637.1 688468..688989(+) (ssb) [Haemophilus influenzae strain NCTC8468]
ATGGCTGGAATTAATAAAGTCATTATTGTTGGTCATTTAGGTAATGATCCTGAAATTCGTACTATGCCAAACGGCGATGC
CGTTGCAAATATCAGCGTAGCAACCAGTGAAAGCTGGAACGATCGTAATACGGGCGAACGCCGTGAAGTAACAGAATGGC
ACCGCATTGTATTTTATCGTCGTCAAGCAGAGATTTGCGGCGAATATTTACGCAAAGGTTCTCAAGTGTATGTGGAAGGT
CGTTTAAAAACGCGTAAATGGCAAGATCAAAACAGTCAAGATCGCTACACCACAGAAATTCAAGGCGATGTAATGCAAAT
GCTTGGTGGACGTAATCAAAACGCAGGTAGTTATGGCAATGATATGGGCGGCGCACCACAATCCTCTTACCAAGCTCGTC
AAACTAACAATGGTGGTAGTTATCAATCATCTCGTTCTGCGCCACAATCAGCCACATCACAACCAGCAACACCACAGGCT
GAGCCACCAATGGACGGATTCGATGACGATATTCCGTTCTAA
ATGGCTGGAATTAATAAAGTCATTATTGTTGGTCATTTAGGTAATGATCCTGAAATTCGTACTATGCCAAACGGCGATGC
CGTTGCAAATATCAGCGTAGCAACCAGTGAAAGCTGGAACGATCGTAATACGGGCGAACGCCGTGAAGTAACAGAATGGC
ACCGCATTGTATTTTATCGTCGTCAAGCAGAGATTTGCGGCGAATATTTACGCAAAGGTTCTCAAGTGTATGTGGAAGGT
CGTTTAAAAACGCGTAAATGGCAAGATCAAAACAGTCAAGATCGCTACACCACAGAAATTCAAGGCGATGTAATGCAAAT
GCTTGGTGGACGTAATCAAAACGCAGGTAGTTATGGCAATGATATGGGCGGCGCACCACAATCCTCTTACCAAGCTCGTC
AAACTAACAATGGTGGTAGTTATCAATCATCTCGTTCTGCGCCACAATCAGCCACATCACAACCAGCAACACCACAGGCT
GAGCCACCAATGGACGGATTCGATGACGATATTCCGTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
64.13 |
100 |
0.682 |
| ssb | Vibrio cholerae strain A1552 |
55.307 |
100 |
0.572 |
| ssb | Neisseria gonorrhoeae MS11 |
50 |
100 |
0.514 |
| ssb | Neisseria meningitidis MC58 |
49.438 |
100 |
0.509 |