Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD   Type   Machinery gene
Locus tag   FGK83_RS03335 Genome accession   NZ_LR590465
Coordinates   666124..666537 (-) Length   137 a.a.
NCBI ID   WP_138171618.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC8468     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 661124..671537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK83_RS03310 (NCTC8468_00654) nudC 661603..662397 (-) 795 WP_138171614.1 NAD(+) diphosphatase -
  FGK83_RS03315 (NCTC8468_00655) nfuA 662465..663061 (-) 597 WP_114893180.1 Fe-S biogenesis protein NfuA -
  FGK83_RS03320 (NCTC8468_00656) - 663137..663823 (-) 687 WP_050847360.1 ComF family protein -
  FGK83_RS03325 (NCTC8468_00657) tnpA 664319..664774 (-) 456 WP_138171615.1 IS200/IS605 family transposase -
  FGK83_RS03330 (NCTC8468_00658) comE 664771..666114 (-) 1344 WP_138171617.1 type IV pilus secretin PilQ Machinery gene
  FGK83_RS03335 (NCTC8468_00659) comD 666124..666537 (-) 414 WP_138171618.1 pilus assembly protein PilP Machinery gene
  FGK83_RS03340 (NCTC8468_00660) comC 666534..667055 (-) 522 WP_138171620.1 competence protein ComC Machinery gene
  FGK83_RS03345 (NCTC8468_00661) comB 667052..667558 (-) 507 WP_114893185.1 competence protein B Machinery gene
  FGK83_RS03350 (NCTC8468_00662) comA 667559..668356 (-) 798 WP_114893186.1 pilus assembly protein PilM Machinery gene
  FGK83_RS03355 (NCTC8468_00663) - 668455..671055 (+) 2601 WP_138171622.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15675.80 Da        Isoelectric Point: 4.4355

>NTDB_id=1126743 FGK83_RS03335 WP_138171618.1 666124..666537(-) (comD) [Haemophilus influenzae strain NCTC8468]
MKYWFFLTALLFINCTWGQDPFDKTQRNRFQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF

Nucleotide


Download         Length: 414 bp        

>NTDB_id=1126743 FGK83_RS03335 WP_138171618.1 666124..666537(-) (comD) [Haemophilus influenzae strain NCTC8468]
ATGAAGTATTGGTTTTTCCTAACAGCATTGCTTTTTATAAATTGCACTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTTTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTATTGCAAGATCAAGGTTTGCAAGTTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(36-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD Haemophilus influenzae Rd KW20

94.891

100

0.949
  comD Haemophilus influenzae 86-028NP

94.161

100

0.942

Multiple sequence alignment