Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Machinery gene
Locus tag   FGK83_RS03345 Genome accession   NZ_LR590465
Coordinates   667052..667558 (-) Length   168 a.a.
NCBI ID   WP_114893185.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC8468     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 662052..672558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK83_RS03315 (NCTC8468_00655) nfuA 662465..663061 (-) 597 WP_114893180.1 Fe-S biogenesis protein NfuA -
  FGK83_RS03320 (NCTC8468_00656) - 663137..663823 (-) 687 WP_050847360.1 ComF family protein -
  FGK83_RS03325 (NCTC8468_00657) tnpA 664319..664774 (-) 456 WP_138171615.1 IS200/IS605 family transposase -
  FGK83_RS03330 (NCTC8468_00658) comE 664771..666114 (-) 1344 WP_138171617.1 type IV pilus secretin PilQ Machinery gene
  FGK83_RS03335 (NCTC8468_00659) comD 666124..666537 (-) 414 WP_138171618.1 pilus assembly protein PilP Machinery gene
  FGK83_RS03340 (NCTC8468_00660) comC 666534..667055 (-) 522 WP_138171620.1 competence protein ComC Machinery gene
  FGK83_RS03345 (NCTC8468_00661) comB 667052..667558 (-) 507 WP_114893185.1 competence protein B Machinery gene
  FGK83_RS03350 (NCTC8468_00662) comA 667559..668356 (-) 798 WP_114893186.1 pilus assembly protein PilM Machinery gene
  FGK83_RS03355 (NCTC8468_00663) - 668455..671055 (+) 2601 WP_138171622.1 penicillin-binding protein 1A -
  FGK83_RS03360 (NCTC8468_00664) - 671132..671977 (+) 846 WP_138171624.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  FGK83_RS03365 (NCTC8468_00665) - 672146..672475 (+) 330 WP_032826791.1 YbaB/EbfC family nucleoid-associated protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 19905.90 Da        Isoelectric Point: 9.6569

>NTDB_id=1126745 FGK83_RS03345 WP_114893185.1 667052..667558(-) (comB) [Haemophilus influenzae strain NCTC8468]
MSMNLLPWRTYQHQKRLRRLAFYIALFILLAINLTLAFSNLIEQQKQDLQAQQTSFEQLNQQLYKTAKKIEQLRSAVQVG
EILTSIPKEQVKKSLQLLSELPFQQGELNKFKQDAHNLSLEGLAQDQREFELIHQFLKKHFPNVKLSQFQPEQQSLYFRF
DVEQGEEK

Nucleotide


Download         Length: 507 bp        

>NTDB_id=1126745 FGK83_RS03345 WP_114893185.1 667052..667558(-) (comB) [Haemophilus influenzae strain NCTC8468]
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAACCTTGGCTTTTAGTAATCTAATTGAACAACAAAAACAAGATCTGCAAGCGCAACAAA
CATCTTTTGAACAACTTAATCAGCAACTTTATAAAACCGCCAAGAAAATTGAACAGTTACGTAGTGCAGTGCAGGTTGGC
GAAATTTTGACATCTATTCCTAAAGAGCAAGTAAAAAAGAGTTTACAGCTGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCTCATAACTTAAGTTTGGAAGGTCTCGCACAAGATCAAAGAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGCCAGTTTCAGCCTGAACAACAGTCATTGTATTTTCGCTTT
GATGTGGAACAAGGAGAAGAAAAGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Haemophilus influenzae 86-028NP

88.095

100

0.881
  comB Haemophilus influenzae Rd KW20

86.905

100

0.869

Multiple sequence alignment