Detailed information
Bioinformatically predicted
Overview
| Name | comW | Type | Regulator |
| Locus tag | E0F34_RS00110 | Genome accession | NZ_LR536843 |
| Coordinates | 19488..19724 (+) | Length | 78 a.a. |
| NCBI ID | WP_000939546.1 | Uniprot ID | - |
| Organism | Streptococcus pneumoniae strain GPSC55 substr. ST3774 isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8 | ||
| Function | stabilization and activation of ComX (predicted from homology) Competence regulation |
||
Genomic Context
Location: 14488..24724
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E0F34_RS00090 (SAMEA104035599_00018) | hpt | 15416..15958 (+) | 543 | WP_000892185.1 | hypoxanthine phosphoribosyltransferase | - |
| E0F34_RS00095 (SAMEA104035599_00019) | ftsH | 15974..17932 (+) | 1959 | WP_000744557.1 | ATP-dependent zinc metalloprotease FtsH | - |
| E0F34_RS00100 (SAMEA104035599_00020) | - | 18038..18391 (+) | 354 | Protein_19 | IS630-like element IS630-Spn1 family transposase | - |
| E0F34_RS00105 | - | 18426..19223 (-) | 798 | Protein_20 | transposase | - |
| E0F34_RS00110 (SAMEA104035599_00021) | comW | 19488..19724 (+) | 237 | WP_000939546.1 | sigma(X)-activator ComW | Regulator |
| E0F34_RS00115 (SAMEA104035599_00022) | - | 19955..21241 (+) | 1287 | WP_000205044.1 | adenylosuccinate synthase | - |
| E0F34_RS00120 (SAMEA104035599_00023) | tadA | 21442..21909 (+) | 468 | WP_000291874.1 | tRNA adenosine(34) deaminase TadA | - |
| E0F34_RS00130 (SAMEA104035599_00025) | - | 22096..22539 (+) | 444 | WP_000701992.1 | dUTP diphosphatase | - |
| E0F34_RS00135 (SAMEA104035599_00026) | - | 22541..23056 (+) | 516 | WP_000691236.1 | histidine phosphatase family protein | - |
| E0F34_RS00140 (SAMEA104035599_00027) | radA | 23070..24431 (+) | 1362 | WP_074017595.1 | DNA repair protein RadA | Machinery gene |
Sequence
Protein
Download Length: 78 a.a. Molecular weight: 9686.14 Da Isoelectric Point: 6.7051
>NTDB_id=1126531 E0F34_RS00110 WP_000939546.1 19488..19724(+) (comW) [Streptococcus pneumoniae strain GPSC55 substr. ST3774 isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8]
MLQKIYEQMANFYDSIEEEYGPTFGDNFDWEHVHFKFLIYYLVRYGIGCRRDFIVYHYRVAYRLYLEKLVMNRGFISC
MLQKIYEQMANFYDSIEEEYGPTFGDNFDWEHVHFKFLIYYLVRYGIGCRRDFIVYHYRVAYRLYLEKLVMNRGFISC
Nucleotide
Download Length: 237 bp
>NTDB_id=1126531 E0F34_RS00110 WP_000939546.1 19488..19724(+) (comW) [Streptococcus pneumoniae strain GPSC55 substr. ST3774 isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8]
ATGTTACAAAAAATTTATGAGCAGATGGCTAATTTCTATGATAGTATTGAAGAAGAGTATGGTCCTACATTTGGTGATAA
TTTTGACTGGGAACATGTTCATTTTAAATTTTTAATTTATTATTTAGTGAGATATGGCATTGGTTGTCGTAGGGATTTTA
TCGTTTACCATTATCGTGTTGCTTATCGTTTGTATCTTGAAAAATTGGTAATGAATCGGGGTTTTATTTCTTGTTGA
ATGTTACAAAAAATTTATGAGCAGATGGCTAATTTCTATGATAGTATTGAAGAAGAGTATGGTCCTACATTTGGTGATAA
TTTTGACTGGGAACATGTTCATTTTAAATTTTTAATTTATTATTTAGTGAGATATGGCATTGGTTGTCGTAGGGATTTTA
TCGTTTACCATTATCGTGTTGCTTATCGTTTGTATCTTGAAAAATTGGTAATGAATCGGGGTTTTATTTCTTGTTGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comW | Streptococcus pneumoniae Rx1 |
98.718 |
100 |
0.987 |
| comW | Streptococcus pneumoniae D39 |
98.718 |
100 |
0.987 |
| comW | Streptococcus pneumoniae R6 |
98.718 |
100 |
0.987 |
| comW | Streptococcus pneumoniae TIGR4 |
98.718 |
100 |
0.987 |
| comW | Streptococcus mitis SK321 |
76.923 |
100 |
0.769 |
| comW | Streptococcus mitis NCTC 12261 |
76.623 |
98.718 |
0.756 |