Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | OU5_RS20630 | Genome accession | NZ_CP005960 |
| Coordinates | 4635359..4635886 (+) | Length | 175 a.a. |
| NCBI ID | WP_010467282.1 | Uniprot ID | A0A6L5BQP5 |
| Organism | Pseudomonas mandelii JR-1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4630359..4640886
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OU5_RS20615 (OU5_4125) | bfr | 4630396..4630860 (+) | 465 | WP_010467276.1 | bacterioferritin | - |
| OU5_RS20620 (OU5_4126) | uvrA | 4630926..4633760 (-) | 2835 | WP_010467278.1 | excinuclease ABC subunit UvrA | - |
| OU5_RS20625 (OU5_4127) | - | 4633952..4635349 (+) | 1398 | WP_010467280.1 | MFS transporter | - |
| OU5_RS20630 (OU5_4128) | ssb | 4635359..4635886 (+) | 528 | WP_010467282.1 | single-stranded DNA-binding protein | Machinery gene |
| OU5_RS20635 (OU5_4129) | - | 4635955..4638159 (-) | 2205 | WP_010467284.1 | OsmC domain/YcaO domain-containing protein | - |
| OU5_RS20640 (OU5_4130) | - | 4638280..4639437 (-) | 1158 | WP_010467286.1 | glutathionylspermidine synthase family protein | - |
| OU5_RS20645 (OU5_4131) | - | 4639450..4640169 (-) | 720 | WP_010467288.1 | DUF1190 domain-containing protein | - |
| OU5_RS20650 (OU5_4132) | - | 4640188..4640616 (-) | 429 | WP_010467290.1 | DUF350 domain-containing protein | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 19396.56 Da Isoelectric Point: 5.9314
>NTDB_id=112644 OU5_RS20630 WP_010467282.1 4635359..4635886(+) (ssb) [Pseudomonas mandelii JR-1]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQSAPAPRQQAPRPQQSAPQQSRQAPPPQQAAP
QPAPDFDSFDDDIPF
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQSAPAPRQQAPRPQQSAPQQSRQAPPPQQAAP
QPAPDFDSFDDDIPF
Nucleotide
Download Length: 528 bp
>NTDB_id=112644 OU5_RS20630 WP_010467282.1 4635359..4635886(+) (ssb) [Pseudomonas mandelii JR-1]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAAACCGGTCAGAAGGTCGAGAAGACTGAAT
GGCACCGTGTTTCGATGTTCGGCAAGGTGGCCGAGATCGCCGGTGAATACCTGCGTAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACCGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTCGGCGGCCGTCCACAGCAGGGCGACCAACAAGGCGGGGGCAATAACTACCAGCAGTCCGCCCCGGCTC
CACGCCAGCAGGCTCCGCGCCCGCAGCAGTCAGCACCGCAGCAGTCGCGTCAGGCTCCGCCTCCACAGCAGGCAGCGCCA
CAACCGGCTCCGGATTTCGACAGCTTTGATGACGATATCCCGTTCTGA
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAAACCGGTCAGAAGGTCGAGAAGACTGAAT
GGCACCGTGTTTCGATGTTCGGCAAGGTGGCCGAGATCGCCGGTGAATACCTGCGTAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACCGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTCGGCGGCCGTCCACAGCAGGGCGACCAACAAGGCGGGGGCAATAACTACCAGCAGTCCGCCCCGGCTC
CACGCCAGCAGGCTCCGCGCCCGCAGCAGTCAGCACCGCAGCAGTCGCGTCAGGCTCCGCCTCCACAGCAGGCAGCGCCA
CAACCGGCTCCGGATTTCGACAGCTTTGATGACGATATCCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
57.065 |
100 |
0.6 |
| ssb | Glaesserella parasuis strain SC1401 |
46.354 |
100 |
0.509 |
| ssb | Neisseria meningitidis MC58 |
47.514 |
100 |
0.491 |
| ssb | Neisseria gonorrhoeae MS11 |
47.514 |
100 |
0.491 |