Detailed information
Bioinformatically predicted
Overview
| Name | comW | Type | Regulator |
| Locus tag | E0F40_RS00025 | Genome accession | NZ_LR216065 |
| Coordinates | 2225..2461 (+) | Length | 78 a.a. |
| NCBI ID | WP_000939545.1 | Uniprot ID | - |
| Organism | Streptococcus pneumoniae strain GPSC18 substr. ST13 isolate 55896440-41bd-11e5-998e-3c4a9275d6c6 | ||
| Function | stabilization and activation of ComX (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1..7461
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E0F40_RS00015 | - | 295..1141 (+) | 847 | Protein_0 | IS630 family transposase | - |
| E0F40_RS00020 | - | 1176..1960 (-) | 785 | Protein_1 | transposase | - |
| E0F40_RS00025 (SAMEA3714487_00005) | comW | 2225..2461 (+) | 237 | WP_000939545.1 | sigma(X)-activator ComW | Regulator |
| E0F40_RS00030 (SAMEA3714487_00006) | - | 2692..3978 (+) | 1287 | WP_001813655.1 | adenylosuccinate synthase | - |
| E0F40_RS00035 (SAMEA3714487_00007) | tadA | 4179..4646 (+) | 468 | WP_000291872.1 | tRNA adenosine(34) deaminase TadA | - |
| E0F40_RS00045 (SAMEA3714487_00008) | - | 4832..5275 (+) | 444 | WP_000701992.1 | dUTP diphosphatase | - |
| E0F40_RS00050 (SAMEA3714487_00009) | - | 5277..5792 (+) | 516 | WP_001828232.1 | histidine phosphatase family protein | - |
| E0F40_RS00055 (SAMEA3714487_00010) | radA | 5806..7167 (+) | 1362 | WP_073176637.1 | DNA repair protein RadA | Machinery gene |
Sequence
Protein
Download Length: 78 a.a. Molecular weight: 9658.13 Da Isoelectric Point: 6.7051
>NTDB_id=1126315 E0F40_RS00025 WP_000939545.1 2225..2461(+) (comW) [Streptococcus pneumoniae strain GPSC18 substr. ST13 isolate 55896440-41bd-11e5-998e-3c4a9275d6c6]
MLQKIYEQMANFYDSIEEEYGPTFGDNFDWEHVHFKFLIYYLVRYGIGCRKDFIVYHYRVAYRLYLEKLVMNRGFISC
MLQKIYEQMANFYDSIEEEYGPTFGDNFDWEHVHFKFLIYYLVRYGIGCRKDFIVYHYRVAYRLYLEKLVMNRGFISC
Nucleotide
Download Length: 237 bp
>NTDB_id=1126315 E0F40_RS00025 WP_000939545.1 2225..2461(+) (comW) [Streptococcus pneumoniae strain GPSC18 substr. ST13 isolate 55896440-41bd-11e5-998e-3c4a9275d6c6]
ATGTTACAAAAAATTTATGAGCAGATGGCTAATTTCTATGATAGTATTGAAGAAGAGTATGGTCCTACATTTGGTGATAA
TTTTGACTGGGAACATGTTCATTTTAAATTTTTAATTTATTATTTAGTGAGATATGGCATTGGTTGTCGTAAGGATTTTA
TCGTTTACCATTATCGTGTTGCTTATCGTTTGTATCTTGAAAAATTGGTAATGAATCGGGGTTTTATTTCTTGTTGA
ATGTTACAAAAAATTTATGAGCAGATGGCTAATTTCTATGATAGTATTGAAGAAGAGTATGGTCCTACATTTGGTGATAA
TTTTGACTGGGAACATGTTCATTTTAAATTTTTAATTTATTATTTAGTGAGATATGGCATTGGTTGTCGTAAGGATTTTA
TCGTTTACCATTATCGTGTTGCTTATCGTTTGTATCTTGAAAAATTGGTAATGAATCGGGGTTTTATTTCTTGTTGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comW | Streptococcus pneumoniae Rx1 |
100 |
100 |
1 |
| comW | Streptococcus pneumoniae D39 |
100 |
100 |
1 |
| comW | Streptococcus pneumoniae R6 |
100 |
100 |
1 |
| comW | Streptococcus pneumoniae TIGR4 |
100 |
100 |
1 |
| comW | Streptococcus mitis SK321 |
75.641 |
100 |
0.756 |
| comW | Streptococcus mitis NCTC 12261 |
75.325 |
98.718 |
0.744 |