Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   E0F31_RS00020 Genome accession   NZ_LR216064
Coordinates   1295..1531 (+) Length   78 a.a.
NCBI ID   WP_000939545.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain GPSC13 substr. ST473 isolate 569492b0-41bd-11e5-998e-3c4a9275d6c6     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1..6531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0F31_RS00015 - 232..1029 (-) 798 Protein_0 transposase -
  E0F31_RS00020 (SAMEA3714520_00004) comW 1295..1531 (+) 237 WP_000939545.1 sigma(X)-activator ComW Regulator
  E0F31_RS00025 (SAMEA3714520_00005) - 1762..3048 (+) 1287 WP_000205044.1 adenylosuccinate synthase -
  E0F31_RS00030 (SAMEA3714520_00006) tadA 3249..3716 (+) 468 WP_000291874.1 tRNA adenosine(34) deaminase TadA -
  E0F31_RS00040 (SAMEA3714520_00007) - 3925..5067 (-) 1143 WP_000266841.1 tyrosine-type recombinase/integrase -
  E0F31_RS00045 (SAMEA3714520_00008) - 5122..6192 (-) 1071 WP_000401841.1 type I restriction endonuclease -

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 9658.13 Da        Isoelectric Point: 6.7051

>NTDB_id=1126240 E0F31_RS00020 WP_000939545.1 1295..1531(+) (comW) [Streptococcus pneumoniae strain GPSC13 substr. ST473 isolate 569492b0-41bd-11e5-998e-3c4a9275d6c6]
MLQKIYEQMANFYDSIEEEYGPTFGDNFDWEHVHFKFLIYYLVRYGIGCRKDFIVYHYRVAYRLYLEKLVMNRGFISC

Nucleotide


Download         Length: 237 bp        

>NTDB_id=1126240 E0F31_RS00020 WP_000939545.1 1295..1531(+) (comW) [Streptococcus pneumoniae strain GPSC13 substr. ST473 isolate 569492b0-41bd-11e5-998e-3c4a9275d6c6]
ATGTTACAAAAAATTTATGAGCAGATGGCTAATTTCTATGATAGTATTGAAGAAGAGTATGGTCCTACATTTGGTGATAA
TTTTGACTGGGAACATGTTCATTTTAAATTTTTAATTTATTATTTAGTGAGATATGGCATTGGTTGTCGTAAGGATTTTA
TCGTTTACCATTATCGTGTTGCTTATCGTTTGTATCTTGAAAAATTGGTAATGAATCGGGGTTTTATTTCTTGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus pneumoniae Rx1

100

100

1
  comW Streptococcus pneumoniae D39

100

100

1
  comW Streptococcus pneumoniae R6

100

100

1
  comW Streptococcus pneumoniae TIGR4

100

100

1
  comW Streptococcus mitis SK321

75.641

100

0.756
  comW Streptococcus mitis NCTC 12261

75.325

98.718

0.744

Multiple sequence alignment