Detailed information
Bioinformatically predicted
Overview
| Name | pilR | Type | Regulator |
| Locus tag | PMYSY11_RS18520 | Genome accession | NZ_LR215729 |
| Coordinates | 4019094..4020431 (+) | Length | 445 a.a. |
| NCBI ID | WP_069898108.1 | Uniprot ID | A0A1I6ZLW4 |
| Organism | Pseudomonas marincola strain YSy11 | ||
| Function | regulate pilin expression (predicted from homology) Competence regulation |
||
Genomic Context
Location: 4014094..4025431
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PMYSY11_RS18505 (PMYSY11_3817) | - | 4015339..4016973 (-) | 1635 | WP_150547679.1 | NAD+ synthase | - |
| PMYSY11_RS18510 (PMYSY11_3818) | - | 4017276..4017509 (+) | 234 | WP_150547680.1 | PP0621 family protein | - |
| PMYSY11_RS18515 (PMYSY11_3819) | pilS | 4017499..4019091 (+) | 1593 | WP_150547681.1 | sensor histidine kinase | Regulator |
| PMYSY11_RS18520 (PMYSY11_3820) | pilR | 4019094..4020431 (+) | 1338 | WP_069898108.1 | sigma-54-dependent transcriptional regulator | Regulator |
| PMYSY11_RS18525 (PMYSY11_3821) | thiO | 4020506..4021606 (-) | 1101 | WP_150547682.1 | glycine oxidase ThiO | - |
| PMYSY11_RS21995 (PMYSY11_3822) | - | 4021939..4022409 (+) | 471 | WP_172970634.1 | GspH/FimT family pseudopilin | - |
| PMYSY11_RS18535 (PMYSY11_3823) | pilV | 4022406..4022888 (+) | 483 | WP_150547683.1 | type IV pilus modification protein PilV | - |
| PMYSY11_RS18540 (PMYSY11_3824) | - | 4022885..4023508 (+) | 624 | WP_150547684.1 | PilW family protein | - |
| PMYSY11_RS18545 (PMYSY11_3825) | - | 4023508..4024005 (+) | 498 | WP_150547685.1 | PilX N-terminal domain-containing pilus assembly protein | - |
Sequence
Protein
Download Length: 445 a.a. Molecular weight: 49448.62 Da Isoelectric Point: 5.6061
>NTDB_id=1125936 PMYSY11_RS18520 WP_069898108.1 4019094..4020431(+) (pilR) [Pseudomonas marincola strain YSy11]
MTRQRALIVDDEPDIRELLEITLGRMKLDTRCARNVKEAREWLSKEPFDLCLTDMRMPDGTGIELVQYISQRHPQMPVAM
ITAYGSLDTAVNALKAGAFDFLTKPVDLNRLRELVNSALRLGSVDNQKLPVDSRLLGDSPPMNSLRKQIHKLARSQAPVY
ISGESGSGKELVARLIHESGPRTEQPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAANGGTLFLDEVADLP
LAMQVKLLRAIQEKAVRPVGGQQEVVVDVRILSATHKDLGAEVAAERFRQDLFYRLNVIELRVPALRERREDISQLANAM
LARLATGSGASPATLTSEALDKLKCYRFPGNVRELENMLERAYTLCEGDEISAGDLRLADASPGGDASEASLAEIDNLED
HLEEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID
MTRQRALIVDDEPDIRELLEITLGRMKLDTRCARNVKEAREWLSKEPFDLCLTDMRMPDGTGIELVQYISQRHPQMPVAM
ITAYGSLDTAVNALKAGAFDFLTKPVDLNRLRELVNSALRLGSVDNQKLPVDSRLLGDSPPMNSLRKQIHKLARSQAPVY
ISGESGSGKELVARLIHESGPRTEQPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAANGGTLFLDEVADLP
LAMQVKLLRAIQEKAVRPVGGQQEVVVDVRILSATHKDLGAEVAAERFRQDLFYRLNVIELRVPALRERREDISQLANAM
LARLATGSGASPATLTSEALDKLKCYRFPGNVRELENMLERAYTLCEGDEISAGDLRLADASPGGDASEASLAEIDNLED
HLEEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID
Nucleotide
Download Length: 1338 bp
>NTDB_id=1125936 PMYSY11_RS18520 WP_069898108.1 4019094..4020431(+) (pilR) [Pseudomonas marincola strain YSy11]
ATGACCCGCCAAAGAGCATTGATCGTTGACGACGAGCCCGATATCCGCGAGCTACTTGAGATAACCCTTGGCCGCATGAA
GCTCGACACCCGTTGTGCGCGCAATGTTAAGGAGGCGCGTGAATGGCTGAGCAAAGAGCCGTTTGACCTGTGCCTGACAG
ACATGCGCATGCCCGACGGCACCGGCATTGAGCTGGTGCAATACATCAGCCAGCGCCACCCGCAGATGCCGGTCGCGATG
ATTACCGCCTACGGCAGCCTCGACACAGCGGTAAACGCGCTAAAGGCCGGGGCGTTTGACTTCCTGACCAAGCCGGTAGA
TCTCAACCGCCTGCGCGAGTTGGTGAACAGCGCATTGCGCCTGGGTTCAGTCGATAATCAGAAGTTGCCGGTTGATAGCC
GTCTACTCGGCGACTCACCGCCGATGAACAGCCTGCGCAAGCAAATCCACAAACTGGCCCGCAGTCAGGCGCCGGTTTAC
ATCAGCGGCGAGTCAGGCAGCGGCAAGGAGCTGGTGGCGCGGTTGATTCACGAATCCGGCCCACGCACCGAACAGCCGTT
CGTGCCGGTCAACTGTGGCGCCATCCCTTCCGAGTTGATGGAGAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACCG
GCGCCATAGAAGACAAGCAAGGGCTTTTTCAAGCGGCCAACGGCGGCACCCTGTTTCTTGATGAAGTCGCCGATCTGCCG
CTGGCGATGCAGGTAAAACTGCTGCGCGCGATTCAGGAAAAAGCCGTGCGCCCGGTGGGCGGTCAGCAGGAAGTGGTGGT
CGATGTGCGCATCCTCTCGGCCACCCATAAAGACCTCGGCGCCGAAGTGGCTGCCGAGCGCTTCCGTCAGGATTTGTTCT
ATCGCCTCAACGTAATCGAACTGCGCGTGCCGGCCTTGCGTGAACGCCGCGAAGACATCAGCCAATTGGCAAATGCCATG
CTTGCAAGACTTGCCACAGGCTCCGGCGCAAGCCCCGCGACGCTTACCAGCGAAGCACTGGACAAGCTCAAGTGCTACCG
TTTTCCCGGCAACGTGCGCGAACTGGAGAACATGCTTGAGCGCGCCTACACCCTATGCGAAGGCGACGAGATCAGCGCCG
GCGATTTGCGCCTTGCCGACGCCTCACCGGGCGGCGATGCCAGCGAGGCGAGCCTGGCCGAGATCGACAACCTTGAAGAT
CACCTCGAAGAGATCGAGCGCAAATTGATCATGCAGGCGCTGGAAGAAACCCGCTGGAATCGCACCGCCGCGGCCCAACG
GCTGGGACTGACATTCAGGTCCATGCGCTACCGTCTGAAGAAGCTGGGCATCGATTAA
ATGACCCGCCAAAGAGCATTGATCGTTGACGACGAGCCCGATATCCGCGAGCTACTTGAGATAACCCTTGGCCGCATGAA
GCTCGACACCCGTTGTGCGCGCAATGTTAAGGAGGCGCGTGAATGGCTGAGCAAAGAGCCGTTTGACCTGTGCCTGACAG
ACATGCGCATGCCCGACGGCACCGGCATTGAGCTGGTGCAATACATCAGCCAGCGCCACCCGCAGATGCCGGTCGCGATG
ATTACCGCCTACGGCAGCCTCGACACAGCGGTAAACGCGCTAAAGGCCGGGGCGTTTGACTTCCTGACCAAGCCGGTAGA
TCTCAACCGCCTGCGCGAGTTGGTGAACAGCGCATTGCGCCTGGGTTCAGTCGATAATCAGAAGTTGCCGGTTGATAGCC
GTCTACTCGGCGACTCACCGCCGATGAACAGCCTGCGCAAGCAAATCCACAAACTGGCCCGCAGTCAGGCGCCGGTTTAC
ATCAGCGGCGAGTCAGGCAGCGGCAAGGAGCTGGTGGCGCGGTTGATTCACGAATCCGGCCCACGCACCGAACAGCCGTT
CGTGCCGGTCAACTGTGGCGCCATCCCTTCCGAGTTGATGGAGAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACCG
GCGCCATAGAAGACAAGCAAGGGCTTTTTCAAGCGGCCAACGGCGGCACCCTGTTTCTTGATGAAGTCGCCGATCTGCCG
CTGGCGATGCAGGTAAAACTGCTGCGCGCGATTCAGGAAAAAGCCGTGCGCCCGGTGGGCGGTCAGCAGGAAGTGGTGGT
CGATGTGCGCATCCTCTCGGCCACCCATAAAGACCTCGGCGCCGAAGTGGCTGCCGAGCGCTTCCGTCAGGATTTGTTCT
ATCGCCTCAACGTAATCGAACTGCGCGTGCCGGCCTTGCGTGAACGCCGCGAAGACATCAGCCAATTGGCAAATGCCATG
CTTGCAAGACTTGCCACAGGCTCCGGCGCAAGCCCCGCGACGCTTACCAGCGAAGCACTGGACAAGCTCAAGTGCTACCG
TTTTCCCGGCAACGTGCGCGAACTGGAGAACATGCTTGAGCGCGCCTACACCCTATGCGAAGGCGACGAGATCAGCGCCG
GCGATTTGCGCCTTGCCGACGCCTCACCGGGCGGCGATGCCAGCGAGGCGAGCCTGGCCGAGATCGACAACCTTGAAGAT
CACCTCGAAGAGATCGAGCGCAAATTGATCATGCAGGCGCTGGAAGAAACCCGCTGGAATCGCACCGCCGCGGCCCAACG
GCTGGGACTGACATTCAGGTCCATGCGCTACCGTCTGAAGAAGCTGGGCATCGATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilR | Pseudomonas aeruginosa PAK |
82.472 |
100 |
0.825 |
| pilR | Acinetobacter baumannii strain A118 |
49.237 |
100 |
0.508 |
| luxO | Vibrio cholerae strain A1552 |
37.36 |
100 |
0.375 |