Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   PMYSY11_RS18515 Genome accession   NZ_LR215729
Coordinates   4017499..4019091 (+) Length   530 a.a.
NCBI ID   WP_150547681.1    Uniprot ID   A0A653DZY1
Organism   Pseudomonas marincola strain YSy11     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4012499..4024091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PMYSY11_RS18495 (PMYSY11_3813) rluD 4012518..4013492 (-) 975 WP_069898103.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PMYSY11_RS18500 (PMYSY11_3814) - 4013641..4014636 (+) 996 WP_069898104.1 outer membrane protein assembly factor BamD -
  PMYSY11_RS18505 (PMYSY11_3817) - 4015339..4016973 (-) 1635 WP_150547679.1 NAD+ synthase -
  PMYSY11_RS18510 (PMYSY11_3818) - 4017276..4017509 (+) 234 WP_150547680.1 PP0621 family protein -
  PMYSY11_RS18515 (PMYSY11_3819) pilS 4017499..4019091 (+) 1593 WP_150547681.1 sensor histidine kinase Regulator
  PMYSY11_RS18520 (PMYSY11_3820) pilR 4019094..4020431 (+) 1338 WP_069898108.1 sigma-54-dependent transcriptional regulator Regulator
  PMYSY11_RS18525 (PMYSY11_3821) thiO 4020506..4021606 (-) 1101 WP_150547682.1 glycine oxidase ThiO -
  PMYSY11_RS21995 (PMYSY11_3822) - 4021939..4022409 (+) 471 WP_172970634.1 GspH/FimT family pseudopilin -
  PMYSY11_RS18535 (PMYSY11_3823) pilV 4022406..4022888 (+) 483 WP_150547683.1 type IV pilus modification protein PilV -
  PMYSY11_RS18540 (PMYSY11_3824) - 4022885..4023508 (+) 624 WP_150547684.1 PilW family protein -
  PMYSY11_RS18545 (PMYSY11_3825) - 4023508..4024005 (+) 498 WP_150547685.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58997.23 Da        Isoelectric Point: 8.3801

>NTDB_id=1125935 PMYSY11_RS18515 WP_150547681.1 4017499..4019091(+) (pilS) [Pseudomonas marincola strain YSy11]
MIADKFTLRGAQGRRILKLYNLYRVIIGLALAFLISSDLDSQLLDMVHPALFRAGSWFYLILNITIAVSVQRPRSTVQIF
SLALVDVILLCALFFAAGGTPSGIGNLLIVAVAISNILLRGRIGLLIAAIATIGMIYLTFYLSIIHPSASSQYVQAGALG
TLCFAAALFVQGISKRLYLSETLAEQRAEEVANLEALNSLILQRMRTGILVLDTHNRVLLANDGAKRLLGHTDITGLIVD
PHCPELINCLHQWHYNPTLRSAEFRAQPDGPMLQPSFVKVQHGAQQNVLVFLDDTTELAQQAQQLKLVALGRLTAGIAHE
IRNPLGAISHASQLLNESEDLQAPDKRLIQIIQDQSRRMNLIIENVLQLSRRRQPEPQLLDLKYWVHRFASEFRGTLKSS
QTLHVETLKGNTKTRMDPNQLTQVVTNLVQNGLRYSAQNNSQAQVWLRLFCADETELPVLEVLDDGRGVPSDQVSHIFEP
FFTTENKGTGLGLYISRELCESNQARLDYKPRDEGGSCFRITFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=1125935 PMYSY11_RS18515 WP_150547681.1 4017499..4019091(+) (pilS) [Pseudomonas marincola strain YSy11]
GTGATCGCTGATAAGTTCACCCTGCGCGGCGCTCAAGGTCGACGGATACTCAAGCTCTACAACCTTTACCGCGTAATCAT
CGGCCTGGCGCTGGCCTTCCTTATTTCCAGCGACCTCGACAGCCAGTTACTCGACATGGTGCATCCGGCGCTATTTCGCG
CCGGCAGCTGGTTCTACCTGATTCTCAACATCACCATTGCGGTCAGCGTGCAACGCCCGCGCAGCACGGTGCAGATATTC
AGCCTGGCCTTGGTCGATGTCATTTTGCTCTGCGCGCTGTTCTTTGCCGCAGGCGGAACGCCCAGCGGTATCGGCAACCT
GCTGATTGTGGCGGTGGCCATATCCAATATTCTGCTGCGCGGCAGAATCGGCCTGCTGATCGCGGCCATTGCCACCATCG
GCATGATTTACCTGACGTTCTACCTGAGCATCATTCACCCATCGGCATCGAGCCAGTATGTGCAGGCCGGGGCACTCGGG
ACCCTGTGTTTCGCCGCTGCGCTATTCGTTCAGGGCATCAGCAAACGTCTGTATTTGAGCGAGACCCTGGCGGAGCAACG
TGCTGAAGAAGTCGCCAACCTGGAAGCCCTAAACTCGTTGATTTTGCAGCGCATGCGCACCGGCATTCTGGTGCTGGATA
CGCATAACCGCGTGCTGTTGGCCAACGATGGCGCCAAACGCCTGCTGGGACACACGGACATTACCGGGCTGATTGTTGAT
CCGCACTGCCCCGAGCTAATCAACTGCCTGCATCAATGGCATTACAACCCGACCCTGCGCTCGGCCGAGTTCAGGGCTCA
GCCGGATGGCCCGATGTTGCAACCAAGCTTTGTTAAGGTGCAACACGGCGCACAGCAGAACGTGCTGGTGTTTCTGGATG
ACACCACCGAGCTAGCCCAACAGGCGCAGCAACTCAAGCTGGTTGCCCTTGGCCGCCTGACTGCTGGCATCGCCCACGAG
ATACGCAACCCGTTGGGCGCCATCAGCCACGCCTCGCAATTGCTCAATGAGTCGGAAGATTTGCAGGCCCCCGATAAACG
CCTGATCCAGATTATTCAGGATCAGTCTCGGCGGATGAACCTGATTATCGAGAACGTGCTGCAGCTATCCCGCCGTCGCC
AGCCGGAGCCGCAACTGCTCGACCTTAAATACTGGGTTCACCGTTTCGCCAGCGAGTTTCGCGGCACCCTGAAAAGCTCG
CAGACGCTGCACGTAGAAACGCTCAAGGGCAATACCAAAACCCGCATGGACCCCAACCAGCTGACCCAAGTGGTAACGAA
TCTGGTGCAAAACGGCTTGCGCTATAGTGCTCAGAACAACAGTCAGGCGCAGGTCTGGTTACGTTTGTTCTGCGCCGATG
AAACCGAATTGCCGGTACTTGAGGTTCTCGATGATGGGCGTGGCGTTCCAAGCGATCAGGTCTCGCACATCTTCGAACCC
TTCTTTACTACCGAGAATAAAGGCACCGGCCTTGGCCTGTATATTTCGCGCGAGCTGTGCGAGAGCAATCAGGCCAGGCT
GGATTACAAACCTCGTGATGAAGGTGGTAGCTGTTTTCGCATCACCTTTGCCCACCCGCGTAAATTGAGCTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A653DZY1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

62.453

100

0.625

Multiple sequence alignment