Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K663_RS00740 Genome accession   NZ_CP005188
Coordinates   142341..142904 (-) Length   187 a.a.
NCBI ID   WP_062112879.1    Uniprot ID   A0A126R3B2
Organism   Sphingobium sp. MI1205     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 137341..147904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K663_RS00715 (K663_00685) - 137575..138060 (-) 486 WP_062112865.1 hypothetical protein -
  K663_RS00720 (K663_00690) - 138096..139382 (-) 1287 WP_062112868.1 transcription antitermination factor NusB -
  K663_RS00725 (K663_00695) htpX 139475..140401 (-) 927 WP_201026658.1 zinc metalloprotease HtpX -
  K663_RS23055 (K663_00700) - 140490..140663 (+) 174 WP_083535784.1 DUF1674 domain-containing protein -
  K663_RS00730 (K663_00705) - 140857..141285 (+) 429 WP_062112872.1 hypothetical protein -
  K663_RS00735 (K663_00710) - 141372..142271 (+) 900 WP_062112876.1 UTP--glucose-1-phosphate uridylyltransferase -
  K663_RS00740 (K663_00715) ssb 142341..142904 (-) 564 WP_062112879.1 single-stranded DNA-binding protein Machinery gene
  K663_RS00745 (K663_00720) - 142954..144816 (-) 1863 WP_062112882.1 ferrous iron transporter B -
  K663_RS00750 (K663_00725) - 144813..145070 (-) 258 WP_062112885.1 FeoA family protein -
  K663_RS00755 (K663_00730) - 145159..145824 (-) 666 WP_062112888.1 COQ9 family protein -
  K663_RS00760 (K663_00735) - 145862..146041 (+) 180 WP_062112891.1 hypothetical protein -
  K663_RS00765 (K663_00740) - 146106..146561 (+) 456 WP_235589474.1 hypothetical protein -
  K663_RS00770 (K663_00745) ribD 146603..147556 (+) 954 WP_062120101.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 19096.64 Da        Isoelectric Point: 5.0178

>NTDB_id=112540 K663_RS00740 WP_062112879.1 142341..142904(-) (ssb) [Sphingobium sp. MI1205]
MAGSVNKVILVGNLGADPEVRSFQNGGKVCNIRIATSESWKDRNSGERKERTEWHSVAIFSEGLAGVAERYLRKGSKVYV
EGKLQTRKWQDQSGNDRYTTEVVLQGPSAVLTMLDGAGGGGGGQGGGRSQGGGSDWGASSGGDYDDFGGSSGGGFGGGSS
GGRPSGGARGGAGGPNFDNDLDDEVPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=112540 K663_RS00740 WP_062112879.1 142341..142904(-) (ssb) [Sphingobium sp. MI1205]
ATGGCGGGTTCGGTCAACAAGGTCATTCTGGTGGGCAATCTGGGTGCGGACCCGGAAGTCCGCAGCTTCCAGAATGGCGG
CAAGGTTTGCAACATCCGCATCGCAACGTCCGAAAGCTGGAAGGACCGCAACTCGGGCGAGCGCAAGGAACGCACCGAAT
GGCACAGCGTCGCGATCTTTTCCGAAGGTCTGGCGGGCGTCGCCGAGCGATATCTGCGCAAGGGCAGCAAAGTCTATGTC
GAGGGCAAGCTGCAGACCCGCAAGTGGCAGGACCAGTCAGGTAATGACCGCTACACCACCGAAGTCGTGCTGCAGGGGCC
GAGCGCGGTCCTGACGATGCTGGACGGCGCGGGCGGCGGCGGTGGCGGCCAGGGCGGCGGACGGTCGCAGGGCGGCGGCA
GCGACTGGGGTGCAAGCTCTGGCGGCGATTATGATGATTTTGGCGGCAGCAGCGGCGGCGGCTTTGGTGGAGGCAGCAGC
GGCGGACGCCCGTCGGGCGGCGCTCGTGGCGGCGCTGGCGGGCCGAATTTCGACAATGACCTGGACGACGAAGTGCCGTT
CTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A126R3B2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.262

100

0.513
  ssb Vibrio cholerae strain A1552

48.663

100

0.487
  ssb Neisseria gonorrhoeae MS11

37.234

100

0.374
  ssb Neisseria meningitidis MC58

37.234

100

0.374

Multiple sequence alignment