Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   YBT1520_RS29070 Genome accession   NZ_CP004858
Coordinates   5589161..5589673 (-) Length   170 a.a.
NCBI ID   WP_000981966.1    Uniprot ID   A0A0A3WKS9
Organism   Bacillus thuringiensis serovar kurstaki str. YBT-1520     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5584161..5594673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YBT1520_RS29050 (YBT1520_29170) rplI 5585371..5585817 (-) 447 WP_000864228.1 50S ribosomal protein L9 -
  YBT1520_RS29055 (YBT1520_29175) - 5585814..5587787 (-) 1974 WP_001113788.1 DHH family phosphoesterase -
  YBT1520_RS29060 (YBT1520_29180) - 5587866..5588801 (-) 936 WP_000806422.1 YybS family protein -
  YBT1520_RS29065 (YBT1520_29185) rpsR 5588882..5589115 (-) 234 WP_000918873.1 30S ribosomal protein S18 -
  YBT1520_RS29070 (YBT1520_29190) ssbA 5589161..5589673 (-) 513 WP_000981966.1 single-stranded DNA-binding protein Machinery gene
  YBT1520_RS29075 (YBT1520_29195) rpsF 5589700..5589990 (-) 291 WP_001233778.1 30S ribosomal protein S6 -
  YBT1520_RS29080 (YBT1520_29200) ychF 5590182..5591282 (-) 1101 WP_000524667.1 redox-regulated ATPase YchF -
  YBT1520_RS29085 (YBT1520_29205) - 5591398..5591595 (-) 198 WP_000435485.1 DUF951 domain-containing protein -
  YBT1520_RS29090 (YBT1520_29210) - 5591616..5592497 (-) 882 WP_000365108.1 mechanosensitive ion channel family protein -
  YBT1520_RS29095 (YBT1520_29215) yyaC 5592757..5593353 (+) 597 WP_001020715.1 spore protease YyaC -
  YBT1520_RS29100 (YBT1520_29220) spo0J 5593374..5594225 (-) 852 WP_001051829.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18494.29 Da        Isoelectric Point: 4.9327

>NTDB_id=112457 YBT1520_RS29070 WP_000981966.1 5589161..5589673(-) (ssbA) [Bacillus thuringiensis serovar kurstaki str. YBT-1520]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYEGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQGSNPFGQSSNSGNQGNSGFTKNDDPFSNVGQP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=112457 YBT1520_RS29070 WP_000981966.1 5589161..5589673(-) (ssbA) [Bacillus thuringiensis serovar kurstaki str. YBT-1520]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCCAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGATGGACGTCTTCAAACTCGT
AATTACGAGGGACAAGATGGTAAACGTGTATACGTAACAGAAGTTCTTGCGGAAAGCGTGCAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTTAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAGGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGTAACCAAGGTAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTAGGTCAACCG
ATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A3WKS9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72.571

100

0.747
  ssb Latilactobacillus sakei subsp. sakei 23K

58.621

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

62.353

0.406
  ssb Glaesserella parasuis strain SC1401

37.43

100

0.394

Multiple sequence alignment