Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   EL309_RS10600 Genome accession   NZ_LR134533
Coordinates   2232593..2236213 (-) Length   1206 a.a.
NCBI ID   WP_004285264.1    Uniprot ID   A0A3S4ZAV9
Organism   Neisseria weaveri strain NCTC12742     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2227593..2241213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL309_RS10580 (NCTC12742_02094) pilU 2227804..2228937 (-) 1134 WP_004285269.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  EL309_RS10585 (NCTC12742_02095) - 2229111..2229830 (+) 720 WP_004285268.1 5'-methylthioadenosine/adenosylhomocysteine nucleosidase -
  EL309_RS10590 (NCTC12742_02096) recD 2229886..2231643 (+) 1758 WP_004285267.1 exodeoxyribonuclease V subunit alpha Machinery gene
  EL309_RS10595 (NCTC12742_02097) ung 2231784..2232443 (+) 660 WP_004285265.1 uracil-DNA glycosylase -
  EL309_RS10600 (NCTC12742_02098) recB 2232593..2236213 (-) 3621 WP_004285264.1 exodeoxyribonuclease V subunit beta Machinery gene
  EL309_RS10605 (NCTC12742_02099) - 2236564..2238327 (+) 1764 WP_004285263.1 ShlB/FhaC/HecB family hemolysin secretion/activation protein -

Sequence

Protein


Download         Length: 1206 a.a.        Molecular weight: 137076.03 Da        Isoelectric Point: 5.2593

>NTDB_id=1124137 EL309_RS10600 WP_004285264.1 2232593..2236213(-) (recB) [Neisseria weaveri strain NCTC12742]
MHTATPFTPLTIDIQNTSLIEASAGTGKTYGIAALFARLVLLEKMPVESILVVTFTKDATAELKTRLRARLDNLLHILEK
VPDAAENSDGLTAYCADKHPKDAFIPALLSQALKQEAQAKLILRLKAAIVQFDNAAIFTIHGFCQRLLRDYAFLCQVPFD
MELSSSGAIERFLTPAQDFWRTRVATDPVLANLAFENKATPRSVLEELIPFIGRPYLKPATAENRLADIQEAVKTVWQTV
RSRLPELEETFWKIHPGLNGSSYRQKSFTEQFAEWKKSAERNTLPGHSKYFEKFDQGALTKGLKKGVIADEQAFAELAVL
AELGEHILVLEEAEEEAFIRLKLDLLDYLKQNLAEQKKSRKERSFDDLLTDVHHALTATPYGEKLAQTISENWRVALIDE
FQDTDPLQYEIFSTAFIRQGTPLFLVGDPKQAIYKFRGADIYAYLKAARDAEHHYTLATNHRSHQELVGNINRLFMQKTH
PFVLNDIRYPEVEAARKEGRLNPKQASFRVRWLIDENGDTPAQRDPLRRLSARYCADEIADALNRAAKGEYRLGDRALEA
GDIAVLVRKGEQGRLIARELKKRNIQSVIQSRESVFAAEETLAIAALIRFWLEPQKTEFLRFVLGSVLFQYTADQLYELN
QNEQLLSEWTDAAAEALEIWQQRGFYAAIQYFSTRYRIESRLLAGKNERSLTNFNQVLELLAEEDEESHSPFSLLQWLQN
EINAAEKGNQDKEKTLRLESDEELVKIVTIHASKGLQYPLVYCPFAWEAQKNQPEGWQILQRSDQTAELCYASQLSEDDK
QQLNEENLGEDLRLLYVVLTRAEEQVTVYAAYCNDTPNNSLAYLLNGNAETRPDEVEAAYSALEKSNRPSLLKQDWQRFL
GIPEPESGCEWLDSVPTPSGYTPDLNRQTAYHATALPKRSFEFIKHTSFTALSSRTSAVEEENREELQPAIDPAETALTV
RPSEISAAYEVSPDSIHHFPRGTKAGVCLHEMLEHLDFSKPAAMQSEQTAACLQKYGFDASWLPSVETMLEQTRLSKLFD
NYALADIPPKKRLPEMAFTLYMEQFDLAQLRRWFERSTLPGACLAAAQHLDFQTVRGFLNGFIDMVCQYSDGHVCIIDYK
SNHLGDNASAYTRRAMDEAVAGHHYYLQALIYSIAVARHFQVRGRPLHGISVRYLFLRGLDGTDNGIWQWDIDTADLQEW
LQAPAQ

Nucleotide


Download         Length: 3621 bp        

>NTDB_id=1124137 EL309_RS10600 WP_004285264.1 2232593..2236213(-) (recB) [Neisseria weaveri strain NCTC12742]
ATGCATACCGCTACTCCGTTTACGCCGCTGACCATCGACATTCAAAACACCAGCTTGATTGAGGCCTCGGCCGGTACCGG
TAAAACCTACGGCATTGCCGCACTGTTTGCACGCTTGGTTTTATTGGAAAAAATGCCGGTTGAAAGCATTCTGGTCGTAA
CCTTTACCAAAGACGCCACTGCGGAATTGAAAACCCGTCTGCGCGCCCGTTTGGACAACCTGCTGCATATTTTGGAAAAA
GTCCCCGATGCCGCAGAAAATTCAGACGGCCTAACGGCTTACTGTGCGGACAAACACCCCAAAGATGCCTTTATTCCCGC
GCTGCTTAGCCAAGCGTTAAAGCAAGAAGCGCAAGCCAAGCTCATTCTGCGTTTGAAAGCGGCCATCGTCCAATTCGACA
ATGCCGCCATTTTCACCATTCACGGCTTCTGCCAACGGCTGCTGCGCGATTACGCTTTTCTTTGCCAAGTACCGTTCGAT
ATGGAATTGTCTTCAAGCGGCGCCATCGAACGCTTTCTGACACCGGCTCAGGATTTTTGGCGCACCCGCGTGGCTACCGA
CCCTGTGTTGGCAAACTTGGCATTTGAAAACAAAGCCACACCGCGAAGCGTATTGGAGGAGCTGATTCCGTTTATCGGCC
GCCCCTACCTGAAACCCGCAACGGCAGAAAACCGCCTGGCCGATATCCAAGAAGCTGTCAAAACCGTGTGGCAGACTGTG
CGCAGCCGTCTGCCGGAACTTGAAGAAACGTTCTGGAAAATCCATCCCGGCCTAAACGGCAGCAGTTACCGCCAAAAAAG
CTTTACCGAGCAATTTGCAGAGTGGAAAAAGTCCGCAGAACGCAACACGCTTCCCGGCCATTCCAAATACTTTGAAAAAT
TCGATCAAGGTGCTTTAACCAAAGGATTGAAAAAAGGGGTAATTGCCGATGAACAGGCTTTTGCCGAACTCGCCGTATTG
GCCGAATTGGGCGAACACATCCTCGTACTCGAAGAAGCAGAAGAAGAAGCCTTTATCCGCTTGAAGCTGGATTTGCTCGA
CTATCTCAAACAAAATCTTGCCGAACAGAAAAAAAGCCGCAAAGAACGCAGCTTCGACGACTTGCTGACCGATGTCCATC
ATGCCCTAACCGCCACGCCCTACGGCGAAAAGCTCGCACAAACCATTTCCGAAAACTGGCGGGTGGCGCTGATTGACGAA
TTTCAGGATACCGATCCGCTGCAATACGAAATTTTCAGCACCGCCTTTATCCGACAAGGTACGCCGCTGTTTTTGGTCGG
CGATCCCAAGCAGGCCATTTACAAATTCCGCGGCGCCGATATTTATGCGTATCTGAAGGCCGCCCGAGATGCGGAACACC
ACTATACACTCGCCACCAACCACCGCAGCCATCAAGAGCTGGTCGGAAACATCAACCGGCTGTTTATGCAGAAAACCCAC
CCCTTTGTTTTAAATGATATCCGCTATCCCGAAGTGGAAGCCGCCCGTAAGGAAGGCCGTCTGAATCCGAAGCAGGCTTC
ATTCCGCGTGCGTTGGCTAATCGATGAAAACGGCGACACACCCGCACAAAGAGACCCGCTCAGACGGCTTTCCGCCCGTT
ATTGCGCCGATGAAATCGCCGATGCACTCAACCGCGCCGCCAAAGGAGAATACCGTTTGGGCGACCGTGCATTAGAGGCC
GGCGATATTGCCGTTTTGGTCAGAAAAGGCGAACAAGGCAGGCTGATTGCGCGCGAACTGAAAAAACGGAATATCCAAAG
CGTGATCCAAAGCCGCGAATCGGTTTTCGCCGCCGAAGAAACGCTGGCAATTGCCGCGTTGATCCGTTTCTGGCTGGAAC
CGCAAAAAACCGAGTTTCTGCGTTTTGTGCTAGGCAGCGTGTTGTTCCAATATACCGCAGACCAACTGTACGAACTCAAT
CAAAACGAACAGCTGCTGTCGGAGTGGACGGATGCCGCCGCCGAAGCATTGGAAATCTGGCAACAGCGCGGTTTTTATGC
CGCCATTCAGTATTTTTCCACCCGCTACCGTATCGAATCCCGTTTGCTGGCCGGAAAAAACGAACGCAGCCTGACCAATT
TCAACCAAGTGTTGGAGCTGCTTGCCGAAGAAGACGAAGAAAGCCATTCGCCGTTTTCGCTGCTGCAATGGCTGCAAAAC
GAAATCAACGCCGCCGAAAAAGGCAATCAAGACAAAGAAAAAACCCTGCGTTTGGAAAGCGATGAAGAGCTGGTCAAAAT
CGTAACCATCCATGCGTCCAAAGGCCTGCAGTATCCGCTGGTTTATTGTCCGTTTGCTTGGGAAGCGCAAAAAAACCAGC
CCGAAGGCTGGCAGATTCTGCAACGCAGCGACCAAACCGCCGAACTATGCTATGCCTCGCAATTAAGCGAAGATGACAAA
CAACAGCTTAACGAAGAAAATTTAGGCGAAGATCTAAGGCTGCTTTATGTGGTGCTGACCCGTGCCGAAGAACAGGTAAC
CGTATATGCCGCCTATTGCAACGATACCCCCAACAACAGTTTGGCATACTTACTGAACGGCAACGCAGAAACCCGACCCG
ACGAAGTGGAAGCCGCCTATTCCGCTTTGGAAAAATCCAACCGCCCGTCGCTGCTGAAACAAGATTGGCAACGCTTTCTC
GGCATACCCGAACCCGAAAGCGGCTGCGAATGGCTCGACAGCGTGCCGACACCTAGCGGCTACACGCCGGATCTCAACCG
CCAAACCGCCTATCACGCGACCGCGCTGCCGAAGCGTTCGTTTGAATTTATCAAACACACCAGTTTCACCGCCTTAAGCA
GCCGGACTTCCGCCGTTGAAGAAGAAAACCGCGAAGAGCTTCAGCCCGCCATCGATCCTGCCGAAACCGCGTTAACGGTA
AGGCCGTCTGAAATTTCCGCTGCTTACGAAGTATCCCCCGACAGCATTCATCATTTTCCGCGCGGCACCAAAGCCGGTGT
GTGTTTACACGAAATGCTGGAGCATTTGGATTTTTCCAAACCTGCAGCCATGCAAAGCGAACAAACCGCCGCCTGCCTGC
AGAAATACGGTTTTGACGCAAGCTGGCTGCCCTCAGTCGAAACCATGCTCGAGCAAACCCGTTTGAGCAAGCTGTTCGAT
AATTATGCGCTGGCCGATATCCCGCCGAAAAAACGCCTGCCCGAAATGGCGTTTACCCTGTATATGGAGCAGTTCGACTT
GGCACAACTGCGCCGGTGGTTTGAACGCTCGACCCTGCCCGGCGCCTGCCTTGCCGCCGCACAACATCTGGATTTCCAAA
CCGTTAGAGGTTTTCTCAACGGCTTTATCGATATGGTTTGCCAATATTCAGACGGCCATGTCTGCATTATCGACTACAAA
TCCAACCATCTGGGCGACAATGCCAGTGCTTATACCCGTCGGGCAATGGACGAAGCCGTGGCCGGACACCATTATTACCT
TCAGGCTTTGATTTACAGCATTGCCGTTGCCCGGCATTTCCAAGTACGCGGCCGTCCGCTGCACGGCATTTCCGTACGCT
ATCTGTTTCTGCGCGGTTTGGACGGCACCGATAACGGCATATGGCAATGGGACATCGACACCGCCGACTTACAGGAATGG
CTGCAAGCACCGGCACAATAA

Domains

Predicted by InterproScan.

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(14-450)

UvrD-like helicase C-terminal domain (UvrD_C)

(455-644)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(986-1181)

UvrD-like helicase C-terminal domain (UvrD_C)

(686-829)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S4ZAV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

54.53

99.751

0.544

Multiple sequence alignment