Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   EL309_RS10590 Genome accession   NZ_LR134533
Coordinates   2229886..2231643 (+) Length   585 a.a.
NCBI ID   WP_004285267.1    Uniprot ID   A0A3S5F9X0
Organism   Neisseria weaveri strain NCTC12742     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2224886..2236643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL309_RS10575 (NCTC12742_02093) dld 2226036..2227727 (+) 1692 WP_004285270.1 D-lactate dehydrogenase -
  EL309_RS10580 (NCTC12742_02094) pilU 2227804..2228937 (-) 1134 WP_004285269.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  EL309_RS10585 (NCTC12742_02095) - 2229111..2229830 (+) 720 WP_004285268.1 5'-methylthioadenosine/adenosylhomocysteine nucleosidase -
  EL309_RS10590 (NCTC12742_02096) recD 2229886..2231643 (+) 1758 WP_004285267.1 exodeoxyribonuclease V subunit alpha Machinery gene
  EL309_RS10595 (NCTC12742_02097) ung 2231784..2232443 (+) 660 WP_004285265.1 uracil-DNA glycosylase -
  EL309_RS10600 (NCTC12742_02098) recB 2232593..2236213 (-) 3621 WP_004285264.1 exodeoxyribonuclease V subunit beta Machinery gene

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 63472.30 Da        Isoelectric Point: 6.0095

>NTDB_id=1124136 EL309_RS10590 WP_004285267.1 2229886..2231643(+) (recD) [Neisseria weaveri strain NCTC12742]
MVAEETTESGSGAANAALRLFGGYAPEAAEQVAPFVRRLFAALKDGHTFIWLDGNDAAALGHAAPIVGVGTDAPLVLDGR
RLFLGRMWQLERDLAKEIVRLATAKTAGVDWMRSRAVLAEWFAGENSKGQRDAAALALLQPFMLISGGPGTGKTTTVAKL
LGLLCLNSGSLPRIGLAAPTGKAAAHMAKALHRALAEFPLPEDIRAHLADSEGKTVHRLLKLRPPQMQPVFGKEKPLPLD
VLIVDEASMLDVSLMLQLLRAVPDGCRVVLLGDENQLPSVGAGAVLAQLAQPTLLDEQTAADLAMILPDHGFQTASQPAP
LSQNTARLVFSHRFGEDSGIGCLARAVVNGEAESAWQQFERFPQELSVCRGGSREQAERLYGLHEAYWQAVDGADVAAAF
RHQADVVVLAARRSEAEAFNEAYRQCLQRHGRVAGDGKWFAGQVLMIERNDYALDLFNGDIGLVLADPDHERQDSDTQAL
AAYFPMADGFKKMALSRLPEHHTAFAMTVHKSQGSEYRDVWLLAEETQNQEEDGRLLDKALLYTAITRARARFVFWGSQA
VFQTACTSEQKRNSALRPMIAEAFG

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=1124136 EL309_RS10590 WP_004285267.1 2229886..2231643(+) (recD) [Neisseria weaveri strain NCTC12742]
ATGGTTGCGGAAGAAACAACAGAATCCGGCAGCGGTGCCGCCAATGCGGCATTGAGGCTGTTCGGCGGGTATGCACCAGA
AGCGGCGGAGCAGGTTGCGCCGTTTGTGCGGCGTTTGTTTGCGGCGTTGAAAGACGGCCACACGTTTATTTGGTTGGACG
GCAACGATGCTGCTGCGCTGGGTCATGCTGCGCCGATTGTCGGCGTCGGCACCGATGCGCCTTTGGTGTTGGACGGCAGA
CGTTTGTTTTTGGGGCGGATGTGGCAGCTGGAACGCGACTTGGCCAAAGAAATCGTGCGCCTGGCAACGGCAAAAACGGC
AGGCGTCGATTGGATGCGGAGCCGCGCGGTGTTGGCGGAGTGGTTTGCAGGCGAAAACAGCAAGGGGCAGCGTGATGCGG
CGGCTTTGGCTTTATTGCAGCCGTTTATGCTGATCAGTGGCGGCCCGGGAACGGGTAAAACCACCACCGTAGCCAAATTG
TTGGGATTGTTGTGTTTAAACAGCGGCAGTCTGCCGCGTATCGGGTTGGCCGCACCGACCGGCAAAGCGGCGGCGCATAT
GGCCAAAGCCCTGCACCGTGCTTTGGCAGAATTTCCGCTGCCGGAAGACATCCGTGCCCATTTGGCCGACAGTGAAGGGA
AAACCGTCCACCGGTTGCTGAAATTGCGTCCGCCGCAAATGCAGCCGGTGTTCGGTAAGGAAAAGCCGTTGCCGCTGGAT
GTATTGATTGTCGATGAAGCATCGATGTTGGACGTTTCCTTAATGCTGCAATTGTTGCGTGCAGTGCCGGACGGTTGCAG
GGTGGTTTTGTTGGGCGATGAAAACCAACTGCCTTCGGTCGGTGCCGGGGCGGTGTTGGCACAATTGGCGCAGCCGACGC
TGCTGGATGAACAAACAGCGGCGGATTTGGCCATGATATTGCCGGATCACGGTTTTCAGACGGCCTCTCAGCCTGCGCCT
TTGTCGCAAAACACCGCACGCTTGGTGTTCAGCCACCGTTTCGGCGAAGACAGCGGCATCGGCTGTCTGGCTCGTGCGGT
GGTAAACGGTGAAGCCGAATCTGCTTGGCAACAGTTTGAGCGTTTTCCTCAGGAATTGTCGGTTTGCCGCGGCGGCAGCC
GTGAGCAGGCGGAACGGTTGTACGGCCTGCATGAAGCCTATTGGCAAGCGGTAGACGGCGCGGATGTGGCGGCGGCTTTC
CGACATCAGGCCGATGTGGTGGTGTTGGCGGCGCGGCGCAGCGAGGCGGAGGCATTTAACGAAGCGTATCGGCAATGCCT
GCAACGGCACGGCAGGGTGGCCGGAGACGGCAAATGGTTTGCCGGCCAAGTGCTGATGATCGAGCGCAACGATTATGCCT
TGGATTTGTTTAACGGCGATATCGGTTTGGTGTTGGCTGATCCCGACCATGAACGGCAGGATTCGGACACGCAGGCTTTG
GCCGCTTATTTCCCGATGGCGGACGGATTTAAAAAAATGGCGCTCAGCCGTTTGCCGGAACACCATACCGCTTTTGCGAT
GACTGTGCATAAAAGTCAGGGTTCGGAATACCGCGATGTGTGGCTGCTGGCCGAAGAGACGCAAAATCAGGAAGAAGACG
GCCGACTCTTGGATAAAGCCTTGCTGTATACCGCCATCACCCGGGCACGGGCGCGTTTTGTTTTTTGGGGCAGCCAAGCG
GTTTTTCAGACGGCCTGTACGTCCGAACAGAAGCGTAACAGCGCCTTGCGCCCTATGATTGCCGAAGCCTTCGGTTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(127-292)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(504-552)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S5F9X0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

57.633

99.658

0.574

Multiple sequence alignment