Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EL309_RS09005 Genome accession   NZ_LR134533
Coordinates   1872797..1873330 (+) Length   177 a.a.
NCBI ID   WP_004283644.1    Uniprot ID   -
Organism   Neisseria weaveri strain NCTC12742     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1867797..1878330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL309_RS08985 (NCTC12742_01778) nhaA 1868099..1869244 (+) 1146 WP_036494761.1 Na+/H+ antiporter NhaA -
  EL309_RS08990 (NCTC12742_01779) pyrC 1869376..1870413 (+) 1038 WP_004283648.1 dihydroorotase -
  EL309_RS08995 (NCTC12742_01780) - 1870537..1871169 (+) 633 WP_004283646.1 lytic transglycosylase domain-containing protein -
  EL309_RS09000 (NCTC12742_01781) - 1871412..1872797 (+) 1386 WP_040669737.1 MFS transporter -
  EL309_RS09005 (NCTC12742_01782) ssb 1872797..1873330 (+) 534 WP_004283644.1 single-stranded DNA-binding protein Machinery gene
  EL309_RS09020 (NCTC12742_01785) yaaA 1874037..1874816 (-) 780 WP_036494765.1 peroxide stress protein YaaA -
  EL309_RS09025 (NCTC12742_01786) - 1875041..1877485 (-) 2445 WP_004283639.1 TonB-dependent receptor -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19432.58 Da        Isoelectric Point: 5.2955

>NTDB_id=1124128 EL309_RS09005 WP_004283644.1 1872797..1873330(+) (ssb) [Neisseria weaveri strain NCTC12742]
MSSLNKVILIGNLGRDPEIRYMPNGEAVCNFSIATSEVWNDRNSGQRQERTEWHNITLYRRLAEVAGQYLRKGSSVYIEG
RIQSRKYTGKDGIERMAFDIIGSEMKMLGSRSGGSSAEYGDGGYQPSAPQGNYMPQESSSAAYQSPAAPQQPPAAPRRQT
PVAPAAPVDDIDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=1124128 EL309_RS09005 WP_004283644.1 1872797..1873330(+) (ssb) [Neisseria weaveri strain NCTC12742]
ATGTCATCATTAAATAAAGTGATTCTTATCGGCAATCTGGGTCGCGACCCGGAAATACGCTATATGCCCAACGGTGAGGC
CGTCTGCAATTTCAGTATTGCAACCAGCGAAGTTTGGAACGACCGTAACAGCGGACAACGCCAAGAACGCACCGAATGGC
ACAACATCACACTTTACCGCCGCTTGGCCGAAGTTGCCGGCCAATATTTGCGTAAAGGCAGCTCGGTATATATCGAAGGC
CGTATCCAAAGCCGCAAATATACAGGCAAAGACGGCATCGAGCGCATGGCGTTCGATATTATCGGCAGTGAAATGAAAAT
GCTGGGTTCACGCAGCGGAGGTTCGTCTGCCGAATACGGAGACGGTGGTTACCAGCCGTCAGCACCGCAAGGCAACTATA
TGCCACAGGAATCTTCATCTGCCGCTTATCAATCACCAGCCGCACCGCAACAGCCTCCGGCTGCTCCACGCCGCCAAACA
CCTGTTGCACCGGCTGCTCCGGTGGACGATATTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

69.143

98.87

0.684
  ssb Neisseria meningitidis MC58

68.571

98.87

0.678
  ssb Vibrio cholerae strain A1552

47.802

100

0.492
  ssb Glaesserella parasuis strain SC1401

46.196

100

0.48

Multiple sequence alignment