Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   EL309_RS05255 Genome accession   NZ_LR134533
Coordinates   1074090..1074395 (-) Length   101 a.a.
NCBI ID   WP_004284769.1    Uniprot ID   A0A3S5CAG4
Organism   Neisseria weaveri strain NCTC12742     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1069090..1079395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL309_RS05230 (NCTC12742_01032) - 1069216..1070136 (+) 921 WP_004285219.1 hydrogen peroxide-inducible genes activator -
  EL309_RS05235 (NCTC12742_01033) - 1070316..1070762 (-) 447 WP_004285397.1 CopD family copper resistance protein -
  EL309_RS05240 (NCTC12742_01034) - 1070894..1071097 (+) 204 WP_004285217.1 glycine zipper 2TM domain-containing protein -
  EL309_RS10780 - 1071294..1071683 (-) 390 WP_232014437.1 OmpA family protein -
  EL309_RS10785 - 1071678..1072133 (-) 456 Protein_1017 outer membrane protein assembly factor BamE -
  EL309_RS05250 (NCTC12742_01036) pilE 1072519..1072998 (-) 480 WP_004285215.1 pilin Machinery gene
  EL309_RS05255 (NCTC12742_01037) comE 1074090..1074395 (-) 306 WP_004284769.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 10545.44 Da        Isoelectric Point: 10.4458

>NTDB_id=1124117 EL309_RS05255 WP_004284769.1 1074090..1074395(-) (comE) [Neisseria weaveri strain NCTC12742]
MKRYLLGLAGVLLSALSLAAVNINTATAEELKALPGIGPAKAEAIVAYRSANGPFKAVEDLKKVKGIGEGVYGRLKDEAT
VAEVKKKEAKPLAKKDGSKKP

Nucleotide


Download         Length: 306 bp        

>NTDB_id=1124117 EL309_RS05255 WP_004284769.1 1074090..1074395(-) (comE) [Neisseria weaveri strain NCTC12742]
ATGAAACGATATCTGTTGGGTTTGGCCGGAGTGCTGCTGTCGGCGCTGTCCTTGGCGGCGGTGAACATCAACACCGCAAC
GGCGGAGGAATTGAAGGCGCTGCCGGGTATCGGTCCGGCGAAGGCGGAGGCGATTGTGGCCTACCGCAGTGCGAACGGTC
CGTTCAAAGCGGTGGAGGACTTGAAGAAGGTGAAGGGGATAGGCGAAGGCGTGTACGGCCGTCTGAAGGATGAGGCGACG
GTGGCGGAGGTGAAGAAGAAGGAGGCGAAGCCGCTGGCGAAGAAAGACGGAAGCAAAAAACCTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S5CAG4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

55.914

92.079

0.515
  comE Neisseria gonorrhoeae MS11

55.914

92.079

0.515
  comE Neisseria gonorrhoeae MS11

55.914

92.079

0.515
  comE Neisseria gonorrhoeae MS11

55.914

92.079

0.515
  comEA Vibrio parahaemolyticus RIMD 2210633

44.944

88.119

0.396

Multiple sequence alignment