Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | EL267_RS02580 | Genome accession | NZ_LR134520 |
| Coordinates | 479725..480216 (+) | Length | 163 a.a. |
| NCBI ID | WP_000609585.1 | Uniprot ID | A0AAV3JH34 |
| Organism | Streptococcus agalactiae strain NCTC13947 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 474725..485216
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL267_RS02555 (NCTC13947_00503) | - | 475498..475998 (+) | 501 | WP_000446811.1 | phosphatase PAP2 family protein | - |
| EL267_RS02560 (NCTC13947_00504) | trxA | 476061..476393 (+) | 333 | WP_001932060.1 | thioredoxin | - |
| EL267_RS02565 (NCTC13947_00505) | - | 476439..477032 (-) | 594 | WP_000402390.1 | helix-turn-helix domain-containing protein | - |
| EL267_RS02570 (NCTC13947_00506) | mutY | 477209..478363 (-) | 1155 | WP_000566234.1 | A/G-specific adenine glycosylase | - |
| EL267_RS02575 (NCTC13947_00507) | rpsF | 479426..479713 (+) | 288 | WP_001151773.1 | 30S ribosomal protein S6 | - |
| EL267_RS02580 (NCTC13947_00508) | ssbA | 479725..480216 (+) | 492 | WP_000609585.1 | single-stranded DNA-binding protein | Machinery gene |
| EL267_RS02585 (NCTC13947_00509) | rpsR | 480261..480500 (+) | 240 | WP_000068665.1 | 30S ribosomal protein S18 | - |
| EL267_RS02590 (NCTC13947_00510) | - | 480670..481614 (+) | 945 | WP_000812124.1 | magnesium transporter CorA family protein | - |
| EL267_RS02595 (NCTC13947_00511) | - | 481639..482310 (+) | 672 | WP_000174849.1 | DUF1129 domain-containing protein | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 18165.81 Da Isoelectric Point: 4.9119
>NTDB_id=1123799 EL267_RS02580 WP_000609585.1 479725..480216(+) (ssbA) [Streptococcus agalactiae strain NCTC13947]
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQSGEREADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVAESFQLLESRATREGGSPNSYNNGGYNNAPSNNSYSASSQQTPNFSRDESPFGNSNPMDISDDD
LPF
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQSGEREADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVAESFQLLESRATREGGSPNSYNNGGYNNAPSNNSYSASSQQTPNFSRDESPFGNSNPMDISDDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=1123799 EL267_RS02580 WP_000609585.1 479725..480216(+) (ssbA) [Streptococcus agalactiae strain NCTC13947]
ATGATTAATAATGTAGTACTTGTAGGTCGCATGACCCGTGATGCAGAACTTCGTTATACACCAAGTAATCAAGCGGTAGC
CACTTTTTCACTTGCAGTTAATCGTAATTTTAAAAATCAATCTGGCGAACGTGAGGCTGATTTTATTAACTGTGTTATTT
GGCGCCAACAAGCTGAAAACTTGGCTAACTGGGCAAAAAAAGGTGCTTTGGTTGGAATTACAGGTCGTATCCAAACACGT
AATTATGAAAACCAACAAGGTCAACGTGTCTATGTAACAGAAGTTGTTGCGGAAAGTTTCCAATTATTGGAAAGTCGTGC
TACACGAGAAGGTGGTTCACCTAACTCTTATAATAACGGTGGCTATAACAATGCTCCATCAAATAATAGTTATTCAGCTT
CTTCTCAACAAACACCTAATTTTAGTCGTGATGAGAGTCCATTTGGTAACTCAAATCCAATGGATATTTCAGATGATGAT
CTACCATTCTAA
ATGATTAATAATGTAGTACTTGTAGGTCGCATGACCCGTGATGCAGAACTTCGTTATACACCAAGTAATCAAGCGGTAGC
CACTTTTTCACTTGCAGTTAATCGTAATTTTAAAAATCAATCTGGCGAACGTGAGGCTGATTTTATTAACTGTGTTATTT
GGCGCCAACAAGCTGAAAACTTGGCTAACTGGGCAAAAAAAGGTGCTTTGGTTGGAATTACAGGTCGTATCCAAACACGT
AATTATGAAAACCAACAAGGTCAACGTGTCTATGTAACAGAAGTTGTTGCGGAAAGTTTCCAATTATTGGAAAGTCGTGC
TACACGAGAAGGTGGTTCACCTAACTCTTATAATAACGGTGGCTATAACAATGCTCCATCAAATAATAGTTATTCAGCTT
CTTCTCAACAAACACCTAATTTTAGTCGTGATGAGAGTCCATTTGGTAACTCAAATCCAATGGATATTTCAGATGATGAT
CTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.714 |
100 |
0.62 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.064 |
100 |
0.62 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
55.963 |
66.871 |
0.374 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
56.604 |
65.031 |
0.368 |