Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | EL256_RS00985 | Genome accession | NZ_LR134517 |
| Coordinates | 204865..206001 (+) | Length | 378 a.a. |
| NCBI ID | WP_126442382.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain NCTC13345 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 199865..211001
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL256_RS00950 (NCTC13345_00191) | panD | 200304..200657 (+) | 354 | WP_000142244.1 | aspartate 1-decarboxylase | - |
| EL256_RS00955 (NCTC13345_00192) | - | 200660..200962 (+) | 303 | WP_000347926.1 | YbaB/EbfC family nucleoid-associated protein | - |
| EL256_RS00960 (NCTC13345_00193) | - | 200962..201966 (+) | 1005 | WP_126443606.1 | PDZ domain-containing protein | - |
| EL256_RS00965 (NCTC13345_00194) | comB6 | 201974..203029 (+) | 1056 | WP_126443607.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| EL256_RS00970 (NCTC13345_00195) | comB7 | 203045..203158 (+) | 114 | WP_001217870.1 | hypothetical protein | Machinery gene |
| EL256_RS00975 (NCTC13345_00196) | comB8 | 203155..203898 (+) | 744 | WP_126442380.1 | type IV secretion system protein | Machinery gene |
| EL256_RS00980 (NCTC13345_00197) | comB9 | 203898..204872 (+) | 975 | WP_126442381.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| EL256_RS00985 (NCTC13345_00198) | comB10 | 204865..206001 (+) | 1137 | WP_126442382.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| EL256_RS00990 (NCTC13345_00199) | - | 206071..207483 (+) | 1413 | WP_126442383.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| EL256_RS00995 (NCTC13345_00200) | gmd | 207524..208669 (+) | 1146 | WP_126442384.1 | GDP-mannose 4,6-dehydratase | - |
| EL256_RS01000 (NCTC13345_00201) | - | 208662..209594 (+) | 933 | WP_126442385.1 | GDP-L-fucose synthase family protein | - |
| EL256_RS01010 (NCTC13345_00202) | - | 209933..210229 (-) | 297 | WP_126443609.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42220.76 Da Isoelectric Point: 9.7473
>NTDB_id=1123753 EL256_RS00985 WP_126442382.1 204865..206001(+) (comB10) [Helicobacter pylori strain NCTC13345]
MNKWLKGAIVFIGGFATITTISLVYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFIQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFTSPPIDPKTNTTPPKKDFSLKQLDLLAARITPFKQSSKNYEENLIFPMDNPNGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
MNKWLKGAIVFIGGFATITTISLVYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFIQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFTSPPIDPKTNTTPPKKDFSLKQLDLLAARITPFKQSSKNYEENLIFPMDNPNGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=1123753 EL256_RS00985 WP_126442382.1 204865..206001(+) (comB10) [Helicobacter pylori strain NCTC13345]
ATGAATAAGTGGCTTAAGGGGGCGATTGTTTTTATAGGGGGTTTTGCAACGATTACAACCATTTCTTTAGTCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCTAGCCTTTTAAATGACGATGAGGTGAAATACCCCTTACAGGATTACACCT
TCATTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCCACTATTAAAGCCTTGCAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAATTATTCTAAAGAAGAAACTTTTACCAGCCCTCCCATAGATCCAAAAAC
AAACACAACCCCCCCTAAAAAAGATTTTTCTCTAAAGCAATTAGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCTCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAA
AAAGACATTGCCACTAATGAAAACAAGCTTCTACGCACCATTACGGCTGACAAAATGATACCCGCCTTTTTGATCACGCC
CATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTCGCTCACATGGGCAAAGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGT
CGAATCATCACTCCCCATGGCATTAATATCATGCTCACTAACGCTAAAGGGGCGGATATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCCTATTGATTG
GGATCACTTCAGCCTTAAACAACAGAGGCAATAAAGAAGAGGTAACTAATTTCTTTGGGGATTACCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCCCCCATTGTGGT
GATTAGAGAGGGGAGTAGGGTCTTCATTTCGCCTAATACTGACATCTTCTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
ATGAATAAGTGGCTTAAGGGGGCGATTGTTTTTATAGGGGGTTTTGCAACGATTACAACCATTTCTTTAGTCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCTAGCCTTTTAAATGACGATGAGGTGAAATACCCCTTACAGGATTACACCT
TCATTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCCACTATTAAAGCCTTGCAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAATTATTCTAAAGAAGAAACTTTTACCAGCCCTCCCATAGATCCAAAAAC
AAACACAACCCCCCCTAAAAAAGATTTTTCTCTAAAGCAATTAGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCTCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAA
AAAGACATTGCCACTAATGAAAACAAGCTTCTACGCACCATTACGGCTGACAAAATGATACCCGCCTTTTTGATCACGCC
CATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTCGCTCACATGGGCAAAGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGT
CGAATCATCACTCCCCATGGCATTAATATCATGCTCACTAACGCTAAAGGGGCGGATATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCCTATTGATTG
GGATCACTTCAGCCTTAAACAACAGAGGCAATAAAGAAGAGGTAACTAATTTCTTTGGGGATTACCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCCCCCATTGTGGT
GATTAGAGAGGGGAGTAGGGTCTTCATTTCGCCTAATACTGACATCTTCTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
97.09 |
100 |
0.971 |