Detailed information NTG1123752

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: EL256_RS00980
• Genome accession: NZ_LR134517
• Coordinates: 203898..204872 (+)
• Length: 324 a.a.
• NCBI ID: WP_126442381.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain NCTC13345
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 198898..209872

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL256_RS00950 (NCTC13345_00191)	panD	200304..200657 (+)	354	WP_000142244.1	aspartate 1-decarboxylase	-
EL256_RS00955 (NCTC13345_00192)	-	200660..200962 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
EL256_RS00960 (NCTC13345_00193)	-	200962..201966 (+)	1005	WP_126443606.1	PDZ domain-containing protein	-
EL256_RS00965 (NCTC13345_00194)	comB6	201974..203029 (+)	1056	WP_126443607.1	P-type conjugative transfer protein TrbL	Machinery gene
EL256_RS00970 (NCTC13345_00195)	comB7	203045..203158 (+)	114	WP_001217870.1	hypothetical protein	Machinery gene
EL256_RS00975 (NCTC13345_00196)	comB8	203155..203898 (+)	744	WP_126442380.1	type IV secretion system protein	Machinery gene
EL256_RS00980 (NCTC13345_00197)	comB9	203898..204872 (+)	975	WP_126442381.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
EL256_RS00985 (NCTC13345_00198)	comB10	204865..206001 (+)	1137	WP_126442382.1	DNA type IV secretion system protein ComB10	Machinery gene
EL256_RS00990 (NCTC13345_00199)	-	206071..207483 (+)	1413	WP_126442383.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
EL256_RS00995 (NCTC13345_00200)	gmd	207524..208669 (+)	1146	WP_126442384.1	GDP-mannose 4,6-dehydratase	-
EL256_RS01000 (NCTC13345_00201)	-	208662..209594 (+)	933	WP_126442385.1	GDP-L-fucose synthase family protein	-

Sequence

Protein

• Length: 324 a.a.
• Molecular weight: 37629.27 Da
• Isoelectric Point: 9.5583

>NTDB_id=1123752 EL256_RS00980 WP_126442381.1 203898..204872(+) (comB9) [Helicobacter pylori strain NCTC13345]
MRKFLYALMGFLLTFSVLKADDFLEEANETAPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFLKPQKENKENTPENAPTNNKPLKEEKEETKEKEEETITIGDNTNAMKIVKKDIQKGYKALKSSQRKWYCLWACS
KKSKLSLMPKEIFNDKQFTYFKFDKRLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSTKWTLRLGKDYLCIRFVKR
ARDE

Nucleotide

• Length: 975 bp

>NTDB_id=1123752 EL256_RS00980 WP_126442381.1 203898..204872(+) (comB9) [Helicobacter pylori strain NCTC13345]
ATGCGGAAATTTTTATACGCTCTCATGGGCTTTTTGTTGACTTTTAGCGTTTTAAAAGCCGATGATTTTTTAGAAGAAGC
GAACGAAACAGCCCCGGCGCATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCCAAAATGTCCAACACCTTGAACATTGATTATTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGATTTGATGCGAAAATCTTAGAAAG
CAACGATCGTATTTTACTCATCAAACCCTTACAAATCGGCGTGGATTCTAATATCAGCGTGATTGACAATGAGGGCAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTACAGGTTTTTATAGAAGATAAAAAT
TATTATTCTAACGCTTTTTTGAAGCCCCAAAAAGAAAATAAAGAAAATACCCCTGAAAACGCTCCCACAAACAACAAACC
CTTAAAAGAAGAAAAAGAAGAAACCAAAGAAAAAGAAGAAGAAACTATAACTATTGGCGATAACACCAATGCGATGAAAA
TCGTTAAAAAAGACATCCAAAAAGGCTATAAGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTATGGGCTTGTTCT
AAAAAATCCAAGCTCTCTTTGATGCCTAAAGAAATTTTTAACGACAAACAATTCACTTATTTCAAATTTGACAAAAGATT
AGCGCTCTCTAAATTCCCGGTGATTTATAAGGTCGTTGATGGCTATGATAACCCGGTGAATACAAGGATTGTGGGCGATT
ACATTATCGCTGAAGACGTTTCTACTAAATGGACTTTAAGGCTGGGTAAGGACTATTTGTGCATCCGTTTTGTTAAAAGG
GCTAGAGATGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-315)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	94.785	100	0.954