Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   EL276_RS08620 Genome accession   NZ_LR134516
Coordinates   1880260..1880553 (-) Length   97 a.a.
NCBI ID   WP_107879337.1    Uniprot ID   A0A3S4XU75
Organism   Neisseria animaloris strain NCTC12227     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1875260..1885553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL276_RS11000 (NCTC12227_01747) - 1875710..1875895 (-) 186 WP_085390933.1 zf-HC2 domain-containing protein -
  EL276_RS08590 (NCTC12227_01748) - 1875945..1876520 (-) 576 WP_085390932.1 sigma-70 family RNA polymerase sigma factor -
  EL276_RS08595 (NCTC12227_01749) - 1876619..1877356 (-) 738 WP_085390931.1 DUF2063 domain-containing protein -
  EL276_RS08600 (NCTC12227_01750) - 1877343..1878194 (-) 852 WP_085390930.1 DUF692 domain-containing protein -
  EL276_RS08605 (NCTC12227_01751) - 1878433..1878729 (-) 297 Protein_1688 hypothetical protein -
  EL276_RS08610 (NCTC12227_01752) - 1878842..1879117 (-) 276 WP_107928630.1 hypothetical protein -
  EL276_RS08615 (NCTC12227_01753) - 1879216..1879677 (-) 462 WP_085390927.1 DoxX family protein -
  EL276_RS08620 (NCTC12227_01754) comE 1880260..1880553 (-) 294 WP_107879337.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10116.93 Da        Isoelectric Point: 10.6529

>NTDB_id=1123738 EL276_RS08620 WP_107879337.1 1880260..1880553(-) (comE) [Neisseria animaloris strain NCTC12227]
MKRYVLALVGMLVSAWSLAAVNINTATAEELKALPGIGPSKAAAIVEYRTQNGKFKSVDELKNVKGIGEGILSKLKAEAV
VSGHGSAKGKAQPVLKK

Nucleotide


Download         Length: 294 bp        

>NTDB_id=1123738 EL276_RS08620 WP_107879337.1 1880260..1880553(-) (comE) [Neisseria animaloris strain NCTC12227]
ATGAAACGGTATGTATTGGCTCTGGTGGGTATGCTGGTATCGGCGTGGTCGTTGGCGGCGGTGAACATCAATACGGCGAC
GGCGGAAGAATTGAAGGCACTGCCGGGAATCGGGCCGTCGAAGGCGGCGGCGATAGTGGAATACCGGACGCAGAACGGCA
AGTTCAAGAGTGTGGACGAATTGAAGAATGTAAAGGGAATCGGTGAGGGGATATTGTCGAAGCTGAAAGCGGAGGCGGTG
GTATCCGGTCATGGATCGGCGAAAGGGAAGGCGCAGCCGGTGCTGAAGAAGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S4XU75

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

57.895

97.938

0.567
  comE Neisseria gonorrhoeae MS11

57.895

97.938

0.567
  comE Neisseria gonorrhoeae MS11

57.895

97.938

0.567
  comE Neisseria gonorrhoeae MS11

57.895

97.938

0.567
  comEA Vibrio parahaemolyticus RIMD 2210633

44.186

88.66

0.392
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

45.122

84.536

0.381

Multiple sequence alignment