Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | EL265_RS04665 | Genome accession | NZ_LR134515 |
| Coordinates | 1019154..1019600 (-) | Length | 148 a.a. |
| NCBI ID | WP_005597397.1 | Uniprot ID | B0BPG5 |
| Organism | Actinobacillus pleuropneumoniae strain NCTC10976 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1014154..1024600
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL265_RS04640 (NCTC10976_00933) | yacG | 1015061..1015249 (-) | 189 | WP_005597388.1 | DNA gyrase inhibitor YacG | - |
| EL265_RS04645 (NCTC10976_00934) | coaE | 1015231..1015869 (-) | 639 | WP_005601202.1 | dephospho-CoA kinase | - |
| EL265_RS04650 (NCTC10976_00935) | - | 1015891..1016529 (-) | 639 | WP_005604550.1 | prepilin peptidase | - |
| EL265_RS04655 (NCTC10976_00936) | pilC | 1016556..1017758 (-) | 1203 | WP_005601207.1 | type II secretion system F family protein | Machinery gene |
| EL265_RS04660 (NCTC10976_00937) | pilB | 1017742..1019136 (-) | 1395 | WP_005601209.1 | GspE/PulE family protein | Machinery gene |
| EL265_RS04665 (NCTC10976_00938) | pilA | 1019154..1019600 (-) | 447 | WP_005597397.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| EL265_RS04670 (NCTC10976_00939) | radA | 1019782..1021161 (+) | 1380 | WP_005601211.1 | DNA repair protein RadA | Machinery gene |
| EL265_RS04675 (NCTC10976_00940) | - | 1021205..1021438 (-) | 234 | WP_005597399.1 | YgjV family protein | - |
| EL265_RS04680 (NCTC10976_00941) | folA | 1021565..1022053 (-) | 489 | WP_005597400.1 | type 3 dihydrofolate reductase | - |
| EL265_RS04685 (NCTC10976_00942) | proB | 1022140..1023231 (+) | 1092 | WP_005601213.1 | glutamate 5-kinase | - |
| EL265_RS04690 (NCTC10976_00943) | - | 1023244..1024020 (+) | 777 | WP_005601215.1 | TSUP family transporter | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 15980.38 Da Isoelectric Point: 7.6257
>NTDB_id=1123688 EL265_RS04665 WP_005597397.1 1019154..1019600(-) (pilA) [Actinobacillus pleuropneumoniae strain NCTC10976]
MQKLSLIRPLTNAFTLIELMIVIAIIAILATVAIPSYNSYTQKAALSELLAASASYKTDVEICIYNTGDSKNCSGGQNGV
RKMTELRQAKYLNAITVEGGTITVTGKGNLQEYGYTMTPIHNGSTISWETKCKGEDLSLFPANFCASN
MQKLSLIRPLTNAFTLIELMIVIAIIAILATVAIPSYNSYTQKAALSELLAASASYKTDVEICIYNTGDSKNCSGGQNGV
RKMTELRQAKYLNAITVEGGTITVTGKGNLQEYGYTMTPIHNGSTISWETKCKGEDLSLFPANFCASN
Nucleotide
Download Length: 447 bp
>NTDB_id=1123688 EL265_RS04665 WP_005597397.1 1019154..1019600(-) (pilA) [Actinobacillus pleuropneumoniae strain NCTC10976]
ATGCAAAAACTAAGTCTTATTCGACCGCTTACTAACGCGTTTACTTTAATTGAATTGATGATCGTGATTGCGATTATTGC
CATTTTAGCTACGGTTGCAATTCCGTCATATAACAGTTATACCCAAAAAGCGGCGCTTTCGGAGCTATTGGCGGCATCGG
CTTCTTATAAAACGGATGTCGAGATCTGCATATATAACACCGGAGATTCTAAAAACTGTAGCGGCGGTCAAAACGGTGTC
AGAAAAATGACGGAGCTTAGACAGGCTAAATATTTAAATGCCATTACGGTGGAAGGCGGAACGATTACAGTAACGGGGAA
AGGGAATCTACAGGAATACGGTTATACGATGACACCGATTCATAACGGTAGCACTATTTCTTGGGAAACGAAATGTAAAG
GGGAGGACTTAAGTTTATTTCCGGCAAATTTCTGCGCATCAAATTAA
ATGCAAAAACTAAGTCTTATTCGACCGCTTACTAACGCGTTTACTTTAATTGAATTGATGATCGTGATTGCGATTATTGC
CATTTTAGCTACGGTTGCAATTCCGTCATATAACAGTTATACCCAAAAAGCGGCGCTTTCGGAGCTATTGGCGGCATCGG
CTTCTTATAAAACGGATGTCGAGATCTGCATATATAACACCGGAGATTCTAAAAACTGTAGCGGCGGTCAAAACGGTGTC
AGAAAAATGACGGAGCTTAGACAGGCTAAATATTTAAATGCCATTACGGTGGAAGGCGGAACGATTACAGTAACGGGGAA
AGGGAATCTACAGGAATACGGTTATACGATGACACCGATTCATAACGGTAGCACTATTTCTTGGGAAACGAAATGTAAAG
GGGAGGACTTAAGTTTATTTCCGGCAAATTTCTGCGCATCAAATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Glaesserella parasuis strain SC1401 |
68.919 |
100 |
0.689 |
| pilA | Haemophilus influenzae 86-028NP |
55.102 |
99.324 |
0.547 |
| pilA | Haemophilus influenzae Rd KW20 |
53.061 |
99.324 |
0.527 |