Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EL252_RS06530 Genome accession   NZ_LR134514
Coordinates   1431782..1432282 (+) Length   166 a.a.
NCBI ID   WP_083004547.1    Uniprot ID   -
Organism   Pasteurella multocida subsp. septica strain NCTC11619     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1426782..1437282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL252_RS06515 (NCTC11619_01312) rlmB 1427325..1428062 (+) 738 WP_126417660.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  EL252_RS06520 (NCTC11619_01313) sodC 1428148..1428708 (-) 561 WP_064964961.1 superoxide dismutase family protein -
  EL252_RS06525 (NCTC11619_01314) uvrA 1428779..1431610 (-) 2832 WP_083004550.1 excinuclease ABC subunit UvrA -
  EL252_RS06530 (NCTC11619_01315) ssb 1431782..1432282 (+) 501 WP_083004547.1 single-stranded DNA-binding protein Machinery gene
  EL252_RS11110 - 1434136..1434405 (-) 270 WP_232012899.1 hypothetical protein -
  EL252_RS06555 (NCTC11619_01318) - 1434398..1435021 (+) 624 WP_232012900.1 aldo/keto reductase -
  EL252_RS06560 (NCTC11619_01319) - 1435096..1435956 (-) 861 WP_126417661.1 DUF4145 domain-containing protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18685.73 Da        Isoelectric Point: 5.3353

>NTDB_id=1123670 EL252_RS06530 WP_083004547.1 1431782..1432282(+) (ssb) [Pasteurella multocida subsp. septica strain NCTC11619]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTAAPQYNAPTGGYGVQPSRPATKPAPQNEPPMDMGFE
EDNIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=1123670 EL252_RS06530 WP_083004547.1 1431782..1432282(+) (ssb) [Pasteurella multocida subsp. septica strain NCTC11619]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGAAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGTGTCGCCACAAGCGAAAGTTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGTCGCCAAGCTGAAGTAGCTGGGGAATATCTGCGTAAAGGTTCAAAAGTGTATGTAGAAGGA
CGCCTAAAAACCCGTAAATGGCAAGACCAAAATGGGCAAGATCGCTACACTACCGAAATCCAAGGCGACGTGTTACAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTATGCCCCACAAACCGCTGCGCCACAATATAATGCCCCAACAG
GTGGCTACGGCGTACAACCTTCTCGTCCAGCGACAAAACCCGCCCCACAAAACGAACCTCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

67.568

100

0.753
  ssb Vibrio cholerae strain A1552

53.591

100

0.584
  ssb Neisseria meningitidis MC58

43.503

100

0.464
  ssb Neisseria gonorrhoeae MS11

43.503

100

0.464

Multiple sequence alignment