Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   P73_RS13250 Genome accession   NZ_CP004393
Coordinates   2624306..2624830 (+) Length   174 a.a.
NCBI ID   WP_043869934.1    Uniprot ID   A0A0B5E2T4
Organism   Celeribacter indicus strain P73     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2619306..2629830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P73_RS13220 (P73_2620) frr 2619314..2619877 (-) 564 WP_043869930.1 ribosome recycling factor -
  P73_RS13225 (P73_2621) pyrH 2619960..2620697 (-) 738 WP_043871702.1 UMP kinase -
  P73_RS13230 (P73_2622) miaA 2620835..2621722 (+) 888 WP_043869931.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  P73_RS13235 (P73_2623) - 2621876..2622778 (+) 903 WP_043869932.1 helix-turn-helix domain-containing protein -
  P73_RS13240 (P73_2624) - 2622854..2623432 (-) 579 WP_043869933.1 hypothetical protein -
  P73_RS13245 (P73_2625) - 2623542..2624135 (-) 594 WP_139267029.1 lytic transglycosylase domain-containing protein -
  P73_RS13250 (P73_2626) ssb 2624306..2624830 (+) 525 WP_043869934.1 single-stranded DNA-binding protein Machinery gene
  P73_RS13255 (P73_2627) - 2624998..2625822 (+) 825 WP_052453256.1 universal stress protein -
  P73_RS13260 (P73_2628) aroB 2625883..2627004 (-) 1122 WP_043869935.1 3-dehydroquinate synthase -
  P73_RS13265 (P73_2629) - 2627001..2627555 (-) 555 WP_043869936.1 shikimate kinase -
  P73_RS26185 - 2627791..2627928 (+) 138 WP_169747681.1 hypothetical protein -
  P73_RS13270 (P73_2630) - 2627942..2629540 (+) 1599 WP_052453257.1 hypothetical protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18659.27 Da        Isoelectric Point: 5.0578

>NTDB_id=112367 P73_RS13250 WP_043869934.1 2624306..2624830(+) (ssb) [Celeribacter indicus strain P73]
MAGSVNKVILVGNLGRDPEVRTFQNGGKVCNLRIATSENWKDRNTGERRERTEWHSVAIFSEPLARIAEQYLRKGSKVYI
EGQLETRKWQDQQGQDRYTTEIVLRPYRGELTLLDSRGEGGQGGGGYGGGYDQGGGGGYDDPGYGGGSQGGGYGGGSQGG
GGGRSSMDDDEIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=112367 P73_RS13250 WP_043869934.1 2624306..2624830(+) (ssb) [Celeribacter indicus strain P73]
ATGGCCGGATCCGTGAACAAAGTCATCCTCGTCGGCAACCTCGGGCGCGATCCGGAGGTGCGGACCTTCCAGAACGGCGG
CAAGGTGTGCAACCTGCGCATTGCCACCTCCGAGAACTGGAAGGACCGCAACACCGGCGAGCGGCGCGAGCGCACCGAAT
GGCACTCGGTCGCGATCTTCTCCGAACCGCTCGCGCGGATCGCGGAGCAATATCTGCGCAAGGGCTCGAAGGTCTATATC
GAGGGCCAGCTCGAGACGCGCAAGTGGCAGGACCAGCAGGGCCAGGACCGCTACACCACGGAGATCGTGCTGCGCCCCTA
TCGCGGCGAGCTCACCCTACTCGACAGCCGCGGCGAGGGCGGCCAGGGCGGCGGCGGCTATGGCGGCGGCTACGATCAGG
GCGGCGGTGGCGGCTATGACGATCCGGGCTATGGCGGCGGTTCGCAGGGCGGCGGCTACGGCGGCGGCTCCCAGGGCGGT
GGCGGCGGGCGCTCGTCGATGGATGACGACGAGATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B5E2T4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.802

100

0.546
  ssb Vibrio cholerae strain A1552

48.555

99.425

0.483
  ssb Neisseria gonorrhoeae MS11

50.382

75.287

0.379
  ssb Neisseria meningitidis MC58

50.382

75.287

0.379

Multiple sequence alignment