Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | EL254_RS08540 | Genome accession | NZ_LR134512 |
| Coordinates | 1635840..1636331 (-) | Length | 163 a.a. |
| NCBI ID | WP_000609585.1 | Uniprot ID | A0AAV3JH34 |
| Organism | Streptococcus agalactiae strain NCTC13949 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1630840..1641331
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL254_RS08525 (NCTC13949_01683) | - | 1633746..1634417 (-) | 672 | WP_000174849.1 | DUF1129 domain-containing protein | - |
| EL254_RS08530 (NCTC13949_01684) | - | 1634442..1635386 (-) | 945 | WP_000812124.1 | magnesium transporter CorA family protein | - |
| EL254_RS08535 (NCTC13949_01685) | rpsR | 1635556..1635795 (-) | 240 | WP_000068665.1 | 30S ribosomal protein S18 | - |
| EL254_RS08540 (NCTC13949_01686) | ssbA | 1635840..1636331 (-) | 492 | WP_000609585.1 | single-stranded DNA-binding protein | Machinery gene |
| EL254_RS08545 (NCTC13949_01687) | rpsF | 1636343..1636630 (-) | 288 | WP_001151773.1 | 30S ribosomal protein S6 | - |
| EL254_RS08550 (NCTC13949_01688) | mutY | 1637693..1638847 (+) | 1155 | WP_000566234.1 | A/G-specific adenine glycosylase | - |
| EL254_RS08555 (NCTC13949_01689) | - | 1639024..1639617 (+) | 594 | WP_000402390.1 | helix-turn-helix domain-containing protein | - |
| EL254_RS08560 (NCTC13949_01690) | trxA | 1639663..1639995 (-) | 333 | WP_001932060.1 | thioredoxin | - |
| EL254_RS08565 (NCTC13949_01691) | - | 1640058..1640558 (-) | 501 | WP_000446811.1 | phosphatase PAP2 family protein | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 18165.81 Da Isoelectric Point: 4.9119
>NTDB_id=1123640 EL254_RS08540 WP_000609585.1 1635840..1636331(-) (ssbA) [Streptococcus agalactiae strain NCTC13949]
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQSGEREADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVAESFQLLESRATREGGSPNSYNNGGYNNAPSNNSYSASSQQTPNFSRDESPFGNSNPMDISDDD
LPF
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQSGEREADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVAESFQLLESRATREGGSPNSYNNGGYNNAPSNNSYSASSQQTPNFSRDESPFGNSNPMDISDDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=1123640 EL254_RS08540 WP_000609585.1 1635840..1636331(-) (ssbA) [Streptococcus agalactiae strain NCTC13949]
ATGATTAATAATGTAGTACTTGTAGGTCGCATGACCCGTGATGCAGAACTTCGTTATACACCAAGTAATCAAGCGGTAGC
CACTTTTTCACTTGCAGTTAATCGTAATTTTAAAAATCAATCTGGCGAACGTGAGGCTGATTTTATTAACTGTGTTATTT
GGCGCCAACAAGCTGAAAACTTGGCTAACTGGGCAAAAAAAGGTGCTTTGGTTGGAATTACAGGTCGTATCCAAACACGT
AATTATGAAAACCAACAAGGTCAACGTGTCTATGTAACAGAAGTTGTTGCGGAAAGTTTCCAATTATTGGAAAGTCGTGC
TACACGAGAAGGTGGTTCACCTAACTCTTATAATAACGGTGGCTATAACAATGCTCCATCAAATAATAGTTATTCAGCTT
CTTCTCAACAAACACCTAATTTTAGTCGTGATGAGAGTCCATTTGGTAACTCAAATCCAATGGATATTTCAGATGATGAT
CTACCATTCTAA
ATGATTAATAATGTAGTACTTGTAGGTCGCATGACCCGTGATGCAGAACTTCGTTATACACCAAGTAATCAAGCGGTAGC
CACTTTTTCACTTGCAGTTAATCGTAATTTTAAAAATCAATCTGGCGAACGTGAGGCTGATTTTATTAACTGTGTTATTT
GGCGCCAACAAGCTGAAAACTTGGCTAACTGGGCAAAAAAAGGTGCTTTGGTTGGAATTACAGGTCGTATCCAAACACGT
AATTATGAAAACCAACAAGGTCAACGTGTCTATGTAACAGAAGTTGTTGCGGAAAGTTTCCAATTATTGGAAAGTCGTGC
TACACGAGAAGGTGGTTCACCTAACTCTTATAATAACGGTGGCTATAACAATGCTCCATCAAATAATAGTTATTCAGCTT
CTTCTCAACAAACACCTAATTTTAGTCGTGATGAGAGTCCATTTGGTAACTCAAATCCAATGGATATTTCAGATGATGAT
CTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.714 |
100 |
0.62 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.064 |
100 |
0.62 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
55.963 |
66.871 |
0.374 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
56.604 |
65.031 |
0.368 |