Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | EL259_RS03230 | Genome accession | NZ_LR134510 |
| Coordinates | 703428..703850 (+) | Length | 140 a.a. |
| NCBI ID | WP_126598952.1 | Uniprot ID | A0A448TTP9 |
| Organism | Actinobacillus delphinicola strain NCTC12871 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 698428..708850
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL259_RS03210 (NCTC12871_00654) | rpsU | 698535..698750 (+) | 216 | WP_126598944.1 | 30S ribosomal protein S21 | - |
| EL259_RS03215 (NCTC12871_00655) | dnaG | 698896..700680 (+) | 1785 | WP_126598946.1 | DNA primase | - |
| EL259_RS03220 (NCTC12871_00656) | rpoD | 700769..702673 (+) | 1905 | WP_126598948.1 | RNA polymerase sigma factor RpoD | - |
| EL259_RS03225 (NCTC12871_00657) | ampD | 702739..703320 (-) | 582 | WP_126598950.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| EL259_RS03230 (NCTC12871_00658) | pilA | 703428..703850 (+) | 423 | WP_126598952.1 | prepilin peptidase-dependent pilin | Machinery gene |
| EL259_RS03235 (NCTC12871_00659) | pilB | 703859..705307 (+) | 1449 | WP_126598954.1 | GspE/PulE family protein | Machinery gene |
| EL259_RS03240 (NCTC12871_00660) | - | 705282..706493 (+) | 1212 | WP_172594213.1 | type II secretion system F family protein | - |
| EL259_RS03245 (NCTC12871_00661) | - | 706497..707216 (+) | 720 | WP_126598958.1 | A24 family peptidase | - |
| EL259_RS03250 (NCTC12871_00662) | coaE | 707247..707858 (+) | 612 | WP_126598960.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 140 a.a. Molecular weight: 15115.48 Da Isoelectric Point: 6.8948
>NTDB_id=1123561 EL259_RS03230 WP_126598952.1 703428..703850(+) (pilA) [Actinobacillus delphinicola strain NCTC12871]
MIISQKLYRGFTLIELMIVIAIVAILATIAIPSYQNYTKKAAVTELIQASAPYKSAVELCLLQTDDLTTCNAGENGIPDN
ISNQGRIQSLTVKAGVISVIGQNNLKGIEYHLTPPANAQNQWTVTCSDKTVFPAAFCQAQ
MIISQKLYRGFTLIELMIVIAIVAILATIAIPSYQNYTKKAAVTELIQASAPYKSAVELCLLQTDDLTTCNAGENGIPDN
ISNQGRIQSLTVKAGVISVIGQNNLKGIEYHLTPPANAQNQWTVTCSDKTVFPAAFCQAQ
Nucleotide
Download Length: 423 bp
>NTDB_id=1123561 EL259_RS03230 WP_126598952.1 703428..703850(+) (pilA) [Actinobacillus delphinicola strain NCTC12871]
ATGATTATTTCTCAGAAATTATATCGTGGATTTACCCTCATTGAACTGATGATTGTCATCGCAATCGTGGCAATTTTAGC
GACTATTGCCATTCCTTCCTACCAAAACTATACAAAAAAAGCGGCCGTCACAGAACTTATTCAAGCCTCTGCACCTTATA
AATCAGCCGTCGAATTATGCTTATTACAAACTGATGATCTGACAACTTGTAATGCAGGTGAAAATGGGATTCCTGATAAC
ATCAGTAATCAAGGTCGAATCCAATCTCTTACTGTAAAAGCAGGGGTAATTTCTGTTATTGGACAAAATAATTTGAAAGG
CATCGAATACCATTTAACACCACCAGCAAATGCCCAAAATCAGTGGACCGTGACTTGTTCTGATAAAACTGTTTTCCCTG
CTGCATTCTGTCAAGCTCAATAG
ATGATTATTTCTCAGAAATTATATCGTGGATTTACCCTCATTGAACTGATGATTGTCATCGCAATCGTGGCAATTTTAGC
GACTATTGCCATTCCTTCCTACCAAAACTATACAAAAAAAGCGGCCGTCACAGAACTTATTCAAGCCTCTGCACCTTATA
AATCAGCCGTCGAATTATGCTTATTACAAACTGATGATCTGACAACTTGTAATGCAGGTGAAAATGGGATTCCTGATAAC
ATCAGTAATCAAGGTCGAATCCAATCTCTTACTGTAAAAGCAGGGGTAATTTCTGTTATTGGACAAAATAATTTGAAAGG
CATCGAATACCATTTAACACCACCAGCAAATGCCCAAAATCAGTGGACCGTGACTTGTTCTGATAAAACTGTTTTCCCTG
CTGCATTCTGTCAAGCTCAATAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Haemophilus influenzae 86-028NP |
55.634 |
100 |
0.564 |
| pilA | Haemophilus influenzae Rd KW20 |
56.522 |
98.571 |
0.557 |
| pilA | Glaesserella parasuis strain SC1401 |
47.518 |
100 |
0.479 |