Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EL296_RS22210 Genome accession   NZ_LR134485
Coordinates   4489130..4489654 (-) Length   174 a.a.
NCBI ID   WP_003826621.1    Uniprot ID   A0A5B0T4S2
Organism   Citrobacter youngae strain NCTC13709     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4484130..4494654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL296_RS22200 (NCTC13709_04516) - 4485974..4486255 (+) 282 WP_048213921.1 YjcB family protein -
  EL296_RS22205 (NCTC13709_04518) - 4486339..4488647 (-) 2309 Protein_4303 autotransporter outer membrane beta-barrel domain-containing protein -
  EL296_RS22210 (NCTC13709_04519) ssb 4489130..4489654 (-) 525 WP_003826621.1 single-stranded DNA-binding protein SSB1 Machinery gene
  EL296_RS22220 (NCTC13709_04520) uvrA 4489906..4492728 (+) 2823 WP_126320215.1 excinuclease ABC subunit UvrA -
  EL296_RS22225 (NCTC13709_04521) - 4492806..4493162 (-) 357 WP_048213923.1 MmcQ/YjbR family DNA-binding protein -
  EL296_RS22230 (NCTC13709_04522) aphA 4493283..4493996 (-) 714 WP_048213924.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18621.66 Da        Isoelectric Point: 5.2456

>NTDB_id=1123152 EL296_RS22210 WP_003826621.1 4489130..4489654(-) (ssb) [Citrobacter youngae strain NCTC13709]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=1123152 EL296_RS22210 WP_003826621.1 4489130..4489654(-) (ssb) [Citrobacter youngae strain NCTC13709]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCGGAAGTCGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTCTATATT
GAAGGCCAACTGCGTACCCGCAAATGGACCGATCAGTCCGGCGTAGAAAAGTACACCACTGAAGTTGTTGTTAACGTTGG
CGGCACCATGCAAATGCTGGGCGGTCGTCAGGGCGGTGGTGCTCCGGCAGGTGGCGGCCAGCAGCAGGGTGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGTAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCTCCGGCAGCGCCG
TCTAACGAACCGCCGATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B0T4S2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.889

100

0.764
  ssb Glaesserella parasuis strain SC1401

56.831

100

0.598
  ssb Neisseria meningitidis MC58

48.603

100

0.5
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.5

Multiple sequence alignment