Detailed information NTG0112308

Bioinformatically predicted

Overview

• Name: ysxA/radC
• Type: Machinery gene
• Locus tag: KQ76_RS08450
• Genome accession: NZ_CP009361
• Coordinates: 1716357..1717043 (-)
• Length: 228 a.a.
• NCBI ID: WP_000692886.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain ATCC 25923
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1711357..1722043

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KQ76_RS08410 (KQ76_08575)	rpmA	1712071..1712355 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
KQ76_RS08415 (KQ76_08580)	-	1712367..1712687 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
KQ76_RS08420 (KQ76_08585)	rplU	1712693..1713001 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
KQ76_RS08425 (KQ76_08590)	mreD	1713294..1713824 (-)	531	WP_001259929.1	rod shape-determining protein MreD	-
KQ76_RS08430 (KQ76_08595)	mreC	1713824..1714666 (-)	843	WP_000911041.1	rod shape-determining protein MreC	-
KQ76_RS08435 (KQ76_08600)	-	1714866..1714985 (-)	120	WP_000840603.1	hypothetical protein	-
KQ76_RS08440 (KQ76_08605)	-	1715059..1715532 (-)	474	WP_001236733.1	DUF4930 family protein	-
KQ76_RS14565	-	1715692..1715889 (+)	198	WP_000025835.1	hypothetical protein	-
KQ76_RS08445 (KQ76_08610)	-	1716005..1716289 (-)	285	WP_000171861.1	hypothetical protein	-
KQ76_RS08450 (KQ76_08615)	ysxA/radC	1716357..1717043 (-)	687	WP_000692886.1	RadC family protein	Machinery gene
KQ76_RS08455 (KQ76_08620)	-	1717040..1717747 (-)	708	WP_000261106.1	prepilin peptidase	-
KQ76_RS08465 (KQ76_08630)	-	1718008..1719279 (-)	1272	WP_001108339.1	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	-
KQ76_RS08470 (KQ76_08635)	-	1719292..1721922 (-)	2631	WP_000425358.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 25311.24 Da
• Isoelectric Point: 6.7572

>NTDB_id=112308 KQ76_RS08450 WP_000692886.1 1716357..1717043(-) (ysxA/radC) [Staphylococcus aureus strain ATCC 25923]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

• Length: 687 bp

>NTDB_id=112308 KQ76_RS08450 WP_000692886.1 1716357..1717043(-) (ysxA/radC) [Staphylococcus aureus strain ATCC 25923]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGTATTGACATTAGTAATGAACTGCTTAAATCTG
CATCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACATTAAAAGCGGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
AATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGAATAGATTTATTGGATCATATTATAATCGGTGATAATA
GATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (103-222)

• UPF0758 N-terminal (UPF0758_N) (3-80)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377