Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EL330_RS16950 Genome accession   NZ_LR134482
Coordinates   3593167..3593661 (-) Length   164 a.a.
NCBI ID   WP_023445625.1    Uniprot ID   V4S0L7
Organism   Stutzerimonas stutzeri strain NCTC10475     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3588167..3598661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL330_RS16925 (NCTC10475_03400) - 3588279..3589625 (-) 1347 WP_101274546.1 MotA/TolQ/ExbB proton channel family protein -
  EL330_RS16930 (NCTC10475_03401) - 3589622..3590407 (-) 786 WP_045666209.1 DUF3450 domain-containing protein -
  EL330_RS16935 (NCTC10475_03402) - 3590592..3591275 (+) 684 WP_101274547.1 OmpW/AlkL family protein -
  EL330_RS16940 (NCTC10475_03403) - 3591350..3592279 (-) 930 WP_101274548.1 NAD-dependent epimerase/dehydratase family protein -
  EL330_RS16945 (NCTC10475_03404) - 3592272..3593156 (-) 885 WP_041014993.1 sugar nucleotide-binding protein -
  EL330_RS16950 (NCTC10475_03405) ssb 3593167..3593661 (-) 495 WP_023445625.1 single-stranded DNA-binding protein Machinery gene
  EL330_RS16955 (NCTC10475_03406) - 3593818..3595185 (-) 1368 WP_101274549.1 MFS transporter -
  EL330_RS16960 (NCTC10475_03407) uvrA 3595317..3598160 (+) 2844 WP_042923776.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18385.46 Da        Isoelectric Point: 5.9492

>NTDB_id=1123072 EL330_RS16950 WP_023445625.1 3593167..3593661(-) (ssb) [Stutzerimonas stutzeri strain NCTC10475]
MARGVNKVILIGNVGGDPETRYMPNGNAVTNITLATTDSWKDKQTGQLQERTEWHRVVLFGKVAEIAGEYLRKGSQCYIE
GRLQTREWEKDGVKRYTTEIVVDMNGTMQLLGGRGGSSDDAPRQARPQQREPQQAPRPQAQPQQPAARQQPAPDYDSFDD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=1123072 EL330_RS16950 WP_023445625.1 3593167..3593661(-) (ssb) [Stutzerimonas stutzeri strain NCTC10475]
ATGGCCAGAGGGGTGAATAAAGTCATCTTGATCGGCAATGTCGGCGGCGACCCGGAAACCCGCTACATGCCCAATGGCAA
TGCGGTGACCAACATCACGCTGGCAACCACCGATAGCTGGAAGGACAAGCAGACCGGCCAGCTTCAGGAGCGTACCGAGT
GGCATCGCGTGGTGTTGTTCGGCAAGGTTGCCGAGATCGCCGGCGAATACCTGCGCAAGGGTTCGCAATGCTACATCGAG
GGACGCCTGCAGACCCGCGAGTGGGAGAAGGACGGCGTCAAGCGCTACACCACCGAAATAGTCGTCGACATGAACGGCAC
CATGCAGCTGCTCGGTGGCCGTGGCGGCAGTTCCGACGATGCGCCGCGTCAGGCTCGCCCGCAGCAGCGTGAGCCGCAGC
AGGCGCCGCGTCCGCAGGCCCAGCCGCAGCAGCCCGCTGCGCGGCAGCAGCCGGCACCGGACTACGACAGCTTCGACGAC
GACATCCCCTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V4S0L7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.386

100

0.616
  ssb Glaesserella parasuis strain SC1401

45.652

100

0.512
  ssb Neisseria gonorrhoeae MS11

47.159

100

0.506
  ssb Neisseria meningitidis MC58

46.591

100

0.5

Multiple sequence alignment