Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   EL330_RS03070 Genome accession   NZ_LR134482
Coordinates   679571..680908 (-) Length   445 a.a.
NCBI ID   WP_041015968.1    Uniprot ID   A0A0I9SKR9
Organism   Stutzerimonas stutzeri strain NCTC10475     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 674571..685908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL330_RS03060 (NCTC10475_00616) - 676642..678237 (-) 1596 WP_044315724.1 response regulator -
  EL330_RS03065 (NCTC10475_00617) - 678453..679511 (+) 1059 WP_101275147.1 DUF2333 family protein -
  EL330_RS03070 (NCTC10475_00618) pilR 679571..680908 (-) 1338 WP_041015968.1 sigma-54-dependent transcriptional regulator Regulator
  EL330_RS03075 (NCTC10475_00619) pilS 681033..682625 (-) 1593 WP_041015969.1 sensor histidine kinase Regulator
  EL330_RS03080 (NCTC10475_00620) - 682615..682848 (-) 234 WP_014819063.1 PP0621 family protein -
  EL330_RS03085 (NCTC10475_00621) - 682965..683954 (-) 990 WP_101275146.1 outer membrane protein assembly factor BamD -
  EL330_RS03090 (NCTC10475_00622) rluD 684160..685134 (+) 975 WP_101275145.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  EL330_RS03095 (NCTC10475_00623) pgeF 685131..685865 (+) 735 WP_101275144.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49545.03 Da        Isoelectric Point: 6.4124

>NTDB_id=1123053 EL330_RS03070 WP_041015968.1 679571..680908(-) (pilR) [Stutzerimonas stutzeri strain NCTC10475]
MTARQKALIIDDEPDIRELLEITLGRMKLDTRSARNLKEARECLAREHYDLCLTDMRLPDGSGLELVQYIQQQHPQLPVA
MITAYGSLDTAIGALKAGAFDFLTKPVDLNRLRELVGTALRLRAPTAEMPVDSRLLGSSPPMKTLRKQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGPRSEKPFVPVNCGAIPSELMESEFFGHKKGSFSGAIEDKPGLFQTANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGAQELMVDVRILCATHKDLASEVAAGRFRQDLYYRLNVIELRVPPLRERREDIGLLAEAM
LRRLAAECGDSSARLHPDALAKLENYRFPGNVRELENMLERAYTLCEGDEIKAGDLRLADSPGVSENGEASLAQIDNLED
HLEEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=1123053 EL330_RS03070 WP_041015968.1 679571..680908(-) (pilR) [Stutzerimonas stutzeri strain NCTC10475]
ATGACCGCGCGCCAGAAAGCACTGATCATCGATGACGAGCCGGATATCCGCGAACTGCTGGAAATTACTCTTGGCCGCAT
GAAACTCGATACCCGCAGCGCTCGCAATCTCAAGGAAGCGCGCGAATGCCTGGCCCGCGAGCATTACGACCTGTGCCTTA
CCGATATGCGTCTGCCCGATGGCAGCGGACTGGAGCTGGTGCAATATATTCAGCAACAGCACCCGCAGCTGCCGGTGGCG
ATGATTACTGCATACGGCAGCCTGGATACCGCCATTGGCGCGCTCAAGGCTGGGGCATTCGACTTTCTCACCAAACCGGT
GGACCTCAACCGCTTGCGCGAGCTGGTCGGCACGGCCCTGCGCCTGAGGGCGCCCACAGCGGAAATGCCGGTGGACAGCC
GCCTGCTCGGCAGCTCGCCACCCATGAAGACCCTTCGCAAGCAGATCGGCAAACTCGCCCGCAGCCAGGCGCCGGTTTAT
ATCAGCGGCGAGTCCGGCAGCGGCAAGGAGCTGGTGGCCCGACTGATTCACGAGCAGGGTCCTCGCAGTGAAAAGCCCTT
TGTGCCCGTCAACTGCGGCGCGATCCCGTCGGAACTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCAGTG
GCGCCATCGAGGACAAGCCCGGGCTATTCCAGACCGCCAATGGCGGCACGCTGTTCCTCGACGAGGTAGCCGACCTGCCG
CTGCCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAGGCTGTACGCGCGGTCGGCGGCGCTCAGGAACTAATGGT
CGATGTGCGCATCCTCTGCGCCACCCACAAGGACCTCGCCAGCGAAGTGGCCGCAGGTCGTTTCCGCCAGGATCTGTATT
ACCGCCTGAATGTCATCGAACTGCGCGTGCCGCCACTGCGCGAGCGTCGCGAAGACATCGGCCTGCTAGCCGAAGCCATG
CTTCGGCGTCTTGCGGCGGAGTGCGGTGACAGCAGCGCTCGCCTGCACCCGGATGCTCTGGCCAAGCTGGAAAACTATCG
CTTCCCGGGGAACGTTCGTGAGCTGGAGAACATGCTCGAGCGGGCCTACACACTCTGCGAGGGCGATGAGATCAAGGCGG
GCGATCTACGCTTGGCAGACAGCCCAGGCGTATCGGAGAACGGTGAAGCCAGTCTGGCGCAGATCGACAATCTGGAAGAT
CACCTGGAAGAGATCGAGCGCAAGCTGATCATGCAGGCGCTGGAGGAAACCCGCTGGAACCGCACTGCGGCGGCCCAACG
GCTGGGGCTGACCTTCCGTTCGATGCGTTACCGGTTGAAAAAACTCGGACTGGACTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Response regulator receiver domain (Response_reg)

(8-116)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0I9SKR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

85.586

99.775

0.854
  pilR Acinetobacter baumannii strain A118

50.109

100

0.517
  luxO Vibrio cholerae strain A1552

37.584

100

0.378

Multiple sequence alignment