Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   EL330_RS03075 Genome accession   NZ_LR134482
Coordinates   681033..682625 (-) Length   530 a.a.
NCBI ID   WP_041015969.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain NCTC10475     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 676033..687625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL330_RS03060 (NCTC10475_00616) - 676642..678237 (-) 1596 WP_044315724.1 response regulator -
  EL330_RS03065 (NCTC10475_00617) - 678453..679511 (+) 1059 WP_101275147.1 DUF2333 family protein -
  EL330_RS03070 (NCTC10475_00618) pilR 679571..680908 (-) 1338 WP_041015968.1 sigma-54-dependent transcriptional regulator Regulator
  EL330_RS03075 (NCTC10475_00619) pilS 681033..682625 (-) 1593 WP_041015969.1 sensor histidine kinase Regulator
  EL330_RS03080 (NCTC10475_00620) - 682615..682848 (-) 234 WP_014819063.1 PP0621 family protein -
  EL330_RS03085 (NCTC10475_00621) - 682965..683954 (-) 990 WP_101275146.1 outer membrane protein assembly factor BamD -
  EL330_RS03090 (NCTC10475_00622) rluD 684160..685134 (+) 975 WP_101275145.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  EL330_RS03095 (NCTC10475_00623) pgeF 685131..685865 (+) 735 WP_101275144.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58861.94 Da        Isoelectric Point: 7.8132

>NTDB_id=1123054 EL330_RS03075 WP_041015969.1 681033..682625(-) (pilS) [Stutzerimonas stutzeri strain NCTC10475]
MGTENLTFFGDQGRRILRLYHLYRLTIGLALVLLISADLHNDLLEMSNPQLFQYGAWIYLILNIIVAVLVQNPERDLPVL
GLALMDVILLSGLFYFGGGTPSGIGNLLIVAVAIANILLRGRVGFFIAAVAATGLIYLTFYLSIQRPEASSQYVQASALG
TLCFAAAFLVQGLARRLQVSETLARQRAEEVANLEALNALILQRMRTGIMVLDPQERVLLANQGALQLLGQDSLAGERLA
PRCPELLKALQQWRGNPTLRPPNLRATPGGPTLQPSFAALQHGNKLDTLVFLEDISQIAQKAQQLKLASLGRLTASIAHE
IRNPLGAISHAAQLLQESEELDGPDRRLAQIIQDHSRRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFASEFRQGLGPQ
QTLHLDTVGSSLQTRMDPNQLTQVLTNLVQNGLRYSGQQNPRAQVWLRLFRDEASDLPIVEVLDDGPGIAAEQLQNIFEP
FFTTESKGTGLGLYISRELCESNQARLDYRERPEGGSCFRIVFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=1123054 EL330_RS03075 WP_041015969.1 681033..682625(-) (pilS) [Stutzerimonas stutzeri strain NCTC10475]
GTGGGCACTGAAAATCTCACCTTCTTTGGCGATCAGGGACGGCGGATTCTCCGCCTGTACCACCTCTATCGGCTGACTAT
CGGCCTGGCGCTGGTTCTGCTGATCAGCGCCGACCTGCACAACGACCTGCTGGAGATGAGCAACCCGCAGCTCTTTCAGT
ACGGCGCCTGGATCTACCTGATCCTCAACATCATCGTCGCCGTGCTGGTGCAGAACCCGGAGCGCGATCTGCCCGTGCTC
GGGCTGGCGCTGATGGACGTCATCCTGCTGTCCGGGCTGTTCTACTTCGGCGGTGGCACCCCGAGCGGTATCGGCAACCT
GCTGATAGTCGCCGTTGCCATCGCCAACATACTGCTGCGTGGCAGGGTCGGTTTCTTCATCGCCGCGGTTGCTGCGACAG
GCCTGATCTACCTGACCTTCTACCTCAGCATTCAACGCCCCGAAGCCAGCAGCCAGTACGTTCAGGCCAGCGCACTCGGC
ACGCTCTGCTTTGCTGCCGCCTTCCTGGTTCAGGGGCTGGCTCGCCGCCTGCAGGTCAGCGAGACGCTGGCGCGCCAGCG
TGCGGAAGAGGTGGCGAACCTGGAGGCGCTCAACGCGCTGATCCTCCAGCGCATGCGTACCGGGATCATGGTGCTGGACC
CGCAGGAGCGCGTTCTGCTCGCCAATCAGGGGGCTCTGCAACTGCTCGGCCAGGACTCGCTGGCAGGCGAACGCCTCGCA
CCACGCTGCCCGGAACTGCTCAAGGCACTGCAACAGTGGCGAGGCAATCCGACCCTGCGCCCACCGAACCTCAGGGCAAC
GCCTGGCGGCCCAACGCTGCAGCCGAGCTTCGCCGCGCTTCAGCACGGGAACAAGCTCGACACACTGGTGTTTCTCGAAG
ACATCTCGCAGATCGCGCAGAAGGCACAACAGCTCAAGCTCGCCTCCCTCGGACGCCTCACAGCCAGCATTGCCCATGAA
ATCCGCAATCCACTGGGCGCCATCAGCCATGCCGCGCAGCTGCTTCAGGAATCCGAAGAACTGGACGGACCTGACCGCCG
TCTGGCACAGATCATTCAGGATCATTCACGGCGGATGAACCTGGTGATCGAGAACGTCCTCCAGCTTTCCCGGCGGCGCC
AGGCCGAACCCCAGCTGCTGGACCTGAAGTACTGGCTGCATCGTTTCGCCAGCGAGTTCCGCCAGGGGCTCGGCCCGCAG
CAGACCCTGCACCTGGATACCGTGGGCAGCTCGCTGCAGACCCGCATGGACCCCAATCAGCTGACCCAGGTGCTGACCAA
CCTGGTCCAGAACGGGCTGCGCTACAGCGGCCAGCAGAATCCGCGGGCGCAGGTCTGGCTCCGCCTGTTCCGTGACGAAG
CCAGCGACCTGCCTATCGTCGAAGTGCTCGATGACGGCCCTGGTATCGCGGCCGAGCAACTTCAGAACATCTTCGAACCG
TTCTTCACCACCGAAAGCAAAGGCACCGGGCTGGGGCTATATATCTCCCGCGAGCTGTGCGAAAGCAACCAGGCACGCCT
GGACTACCGCGAGCGCCCCGAGGGCGGCAGCTGCTTCCGCATCGTCTTCGCCCACCCGCGCAAGCTGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

PAS domain (PAS_8)

(202-240)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

66.226

100

0.662

Multiple sequence alignment