Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   EL216_RS08435 Genome accession   NZ_LR134440
Coordinates   1790198..1790491 (+) Length   97 a.a.
NCBI ID   WP_085390361.1    Uniprot ID   -
Organism   Neisseria animaloris strain NCTC12228     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1779982..1790491 1790198..1790491 within 0


Gene organization within MGE regions


Location: 1779982..1790491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL216_RS08395 (NCTC12228_01688) cas2 1780906..1781199 (+) 294 WP_085391316.1 CRISPR-associated endonuclease Cas2 -
  EL216_RS08400 (NCTC12228_01690) ffh 1781565..1782938 (-) 1374 WP_085391314.1 signal recognition particle protein -
  EL216_RS08405 (NCTC12228_01691) - 1783057..1783863 (+) 807 WP_085391313.1 inner membrane protein YpjD -
  EL216_RS08435 (NCTC12228_01697) comE 1790198..1790491 (+) 294 WP_085390361.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10126.95 Da        Isoelectric Point: 10.6529

>NTDB_id=1122865 EL216_RS08435 WP_085390361.1 1790198..1790491(+) (comE) [Neisseria animaloris strain NCTC12228]
MKRYVLALVGLLVSAWSLAAVNINTATAEELKALPGIGPSKAAAIVEYRTQNGKFKSVDELKNVKGIGEGILSKLKVEAV
VSGHGSAKGKAQPVLKK

Nucleotide


Download         Length: 294 bp        

>NTDB_id=1122865 EL216_RS08435 WP_085390361.1 1790198..1790491(+) (comE) [Neisseria animaloris strain NCTC12228]
ATGAAACGGTATGTATTGGCTCTGGTGGGTCTGCTGGTATCGGCGTGGTCGTTGGCGGCGGTGAACATCAATACGGCGAC
GGCGGAAGAATTGAAGGCACTGCCGGGAATCGGGCCGTCGAAGGCGGCGGCGATAGTGGAATACCGGACGCAGAACGGCA
AGTTCAAGAGTGTGGACGAGTTGAAGAATGTAAAGGGAATCGGTGAGGGGATATTGTCGAAGCTGAAAGTGGAGGCGGTG
GTATCCGGTCATGGATCGGCGAAAGGGAAGGCGCAGCCGGTGCTGAAGAAGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

58.947

97.938

0.577
  comE Neisseria gonorrhoeae MS11

58.947

97.938

0.577
  comE Neisseria gonorrhoeae MS11

58.947

97.938

0.577
  comE Neisseria gonorrhoeae MS11

58.947

97.938

0.577
  comEA Vibrio parahaemolyticus RIMD 2210633

44.186

88.66

0.392
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

46.341

84.536

0.392

Multiple sequence alignment