Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   EL216_RS05885 Genome accession   NZ_LR134440
Coordinates   1270173..1272356 (+) Length   727 a.a.
NCBI ID   WP_085389156.1    Uniprot ID   -
Organism   Neisseria animaloris strain NCTC12228     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1265173..1277356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL216_RS05865 (NCTC12228_01185) pilM 1267254..1268351 (+) 1098 WP_085389160.1 type IV pilus assembly protein PilM -
  EL216_RS05870 (NCTC12228_01186) - 1268353..1268955 (+) 603 WP_085389159.1 PilN domain-containing protein -
  EL216_RS05875 (NCTC12228_01187) - 1268957..1269601 (+) 645 WP_085389158.1 type 4a pilus biogenesis protein PilO -
  EL216_RS05880 (NCTC12228_01188) pilP 1269619..1270155 (+) 537 WP_085389157.1 pilus assembly protein PilP Machinery gene
  EL216_RS05885 (NCTC12228_01189) pilQ 1270173..1272356 (+) 2184 WP_085389156.1 type IV pilus secretin PilQ Machinery gene
  EL216_RS05890 (NCTC12228_01190) - 1272404..1272934 (+) 531 WP_085389155.1 shikimate kinase -
  EL216_RS05895 (NCTC12228_01191) aroB 1273318..1274397 (+) 1080 WP_085389154.1 3-dehydroquinate synthase -
  EL216_RS05900 (NCTC12228_01192) mtgA 1274479..1275165 (-) 687 WP_085389153.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  EL216_RS05905 (NCTC12228_01193) aroE 1275167..1275988 (-) 822 WP_085363331.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 727 a.a.        Molecular weight: 79145.88 Da        Isoelectric Point: 9.9815

>NTDB_id=1122859 EL216_RS05885 WP_085389156.1 1270173..1272356(+) (pilQ) [Neisseria animaloris strain NCTC12228]
MKLYNVKKVLSAIGVGFAVQAAFAGNITDIHVSTLPGNQKIIKIKFDEGAALPRGFITNAPPRIALDFSGTNLQLPQPVL
EYADPLLNQITTAQNNNRSRIVLGLNKTGQYSTEIKGNEVWVYVNEASKANNSVAHPTSNKTDYVAASSHTRKTASKVPL
EQLTTSANIDFRKGPRNSGVVELSAPSFTGEPEVKQQSDRIIVTLKNYPLPTQAQRALDVTDFNTPVRNITMKRIGNDTQ
LVIKNNGSWEVRTKTGSGRFSFEINPKSNVSALGLNKNSNKSFNGKKVSLDFQDIEVRTILQILAKESGLNIVASDTVNG
RMTLSLKDVPWDQALDLVLQARNLDMRRQGNIINVAPRDELLAKDKATLQAQKEIDDLGPLFSQTFQLKYKNVEEFRKIL
RLDENGGNGDSRNSMLSSRGSALIDPATNTLIISDNRGVIQKFQKLIDELDVPTRQVMVEARIVEANDGFSRSLGVKFGY
QGINGRSSIGSDWANAINNLNTKAKNNNTLANSALSGSQTRPTLDPFILNPNVNLPLASATSSIALVRAISSGALGLELQ
AMQEQSKGKVISNPRVLTQDRKEAIIESGTEIPYEEATSSGATSITFKKAVLGLTVTPNITPDGQVIMSVKINKDSPTDC
VASGTTTKCINTKQLQTQAMVEDGGTLIVGGIYEEENGNTVSKVPLLGDIPVVGNLFKSRVRNEARRELLIFITPRIMDN
VGSNLRY

Nucleotide


Download         Length: 2184 bp        

>NTDB_id=1122859 EL216_RS05885 WP_085389156.1 1270173..1272356(+) (pilQ) [Neisseria animaloris strain NCTC12228]
ATGAAATTATACAATGTAAAAAAAGTTCTTTCCGCCATCGGCGTAGGATTTGCTGTTCAGGCAGCTTTTGCAGGCAATAT
TACCGATATCCATGTTTCCACTTTGCCTGGCAACCAAAAAATCATCAAAATCAAATTTGATGAGGGGGCTGCCCTCCCTC
GAGGTTTCATTACCAATGCACCTCCCCGCATCGCTTTGGATTTCAGCGGCACGAACCTTCAACTACCCCAACCAGTTTTG
GAATATGCCGATCCATTGCTAAATCAAATTACTACTGCACAAAATAATAATCGCAGTCGTATTGTGCTCGGATTAAATAA
AACTGGCCAATACAGCACCGAGATTAAAGGCAATGAGGTGTGGGTGTATGTGAATGAAGCTTCTAAAGCAAATAATTCTG
TTGCACACCCCACATCAAACAAAACCGATTATGTTGCTGCATCTAGTCATACTCGTAAGACTGCTTCCAAAGTGCCATTG
GAGCAACTTACTACGTCGGCAAACATCGACTTCCGTAAGGGTCCACGCAATTCAGGTGTTGTAGAGCTAAGTGCGCCATC
CTTTACAGGAGAACCTGAAGTCAAACAGCAAAGTGACCGTATTATTGTTACCCTTAAAAATTATCCTTTGCCTACGCAAG
CACAGCGTGCTTTAGATGTAACCGACTTCAATACACCTGTACGTAACATTACTATGAAGCGTATTGGAAACGATACTCAG
CTGGTAATTAAAAACAATGGCAGTTGGGAAGTACGTACCAAAACGGGATCAGGTCGATTCAGCTTCGAGATTAACCCCAA
AAGCAATGTTAGTGCTTTGGGTTTGAACAAAAATAGTAATAAGTCATTTAACGGCAAGAAAGTTTCTTTAGACTTCCAAG
ATATTGAGGTACGTACTATCCTGCAAATTCTTGCGAAAGAATCTGGGTTAAATATTGTGGCCAGCGACACCGTTAATGGA
AGAATGACCTTATCTCTAAAAGATGTACCTTGGGATCAAGCCTTGGATTTGGTTCTTCAAGCTCGTAATCTTGATATGCG
CCGCCAAGGTAATATCATTAATGTTGCTCCGCGCGATGAGCTGTTGGCTAAAGATAAGGCAACTTTGCAAGCACAAAAAG
AAATTGATGACTTAGGTCCATTATTTTCACAAACCTTCCAGTTGAAATACAAAAATGTAGAGGAATTCCGCAAAATCCTT
CGTTTAGACGAAAATGGTGGAAATGGCGATAGCCGTAACTCTATGTTGAGCAGTCGTGGTAGCGCCTTAATTGATCCTGC
TACAAACACGTTAATTATTTCTGATAACCGGGGAGTTATTCAAAAATTCCAAAAACTCATTGACGAATTGGATGTCCCAA
CACGCCAAGTCATGGTGGAAGCCCGTATTGTTGAAGCTAACGACGGTTTTTCTCGCAGCTTAGGTGTGAAGTTTGGCTAT
CAAGGTATCAATGGCAGAAGCAGCATAGGTTCCGACTGGGCTAATGCTATTAATAACTTAAACACTAAAGCAAAAAATAA
CAACACGTTGGCTAACTCGGCTTTAAGTGGCTCCCAAACCCGCCCTACACTGGATCCATTTATACTGAACCCCAATGTTA
ACTTGCCTTTGGCATCCGCCACTTCAAGCATTGCTTTGGTACGTGCAATCTCATCAGGTGCATTGGGACTGGAATTACAA
GCTATGCAAGAGCAAAGTAAAGGTAAAGTTATTTCCAATCCGCGTGTATTGACTCAAGACCGTAAGGAAGCAATTATTGA
ATCTGGTACAGAGATTCCTTATGAAGAAGCCACTTCCAGCGGTGCAACATCAATTACCTTTAAAAAGGCTGTATTGGGTT
TAACAGTTACACCCAACATTACTCCTGACGGTCAGGTAATTATGTCTGTCAAAATTAATAAAGACAGCCCCACCGATTGC
GTAGCAAGCGGCACAACCACTAAGTGTATCAATACCAAACAACTGCAAACCCAAGCTATGGTTGAAGATGGCGGTACGTT
GATCGTTGGTGGTATTTATGAGGAAGAAAACGGCAATACCGTAAGCAAAGTTCCTCTGTTGGGTGATATTCCTGTGGTAG
GCAATTTGTTCAAATCACGTGTTCGCAATGAAGCTCGTCGCGAATTGCTGATCTTCATTACGCCGCGCATTATGGATAAT
GTCGGCAGCAACTTGCGCTACTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(39-116)

Secretin and TonB N terminus short domain (STN)

(311-355)

Bacterial type II/III secretion system short domain (Secretin_N)

(384-456)

Bacterial type II and III secretion system protein (Secretin)

(561-719)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria gonorrhoeae strain FA1090

57.775

100

0.593
  pilQ Neisseria meningitidis M1080

54.93

100

0.59
  pilQ Neisseria meningitidis MC58

62.566

78.267

0.49

Multiple sequence alignment